Showing : NanoString • reset
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Trying to use a NanoString expression set with batch effects to do GSVA
GSVA Normalization BatchEffect GSVAdata NanoString
22 months ago Zhijie • 0
0
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3
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2.6k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
2
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3
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2.0k
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Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString
updated 2.8 years ago by 42k • written 2.8 years ago by • 0
1
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5
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2.0k
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how to plot multiple RLEs on same plot?
plotRLE Nanostring RUVSeq DESEQ2
updated 3 months ago by ▴ 70 • written 3.4 years ago by ▴ 50
3
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6
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2.2k
views
Why NanoStringDiff package so slow?
NanoStringDiff NanoString nCounter DE analysis
updated 12 months ago by • 0 • written 5.3 years ago by ▴ 50
0
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1
reply
1.9k
views
Application of RUV to a small Nanostring dataset
RUV Nanostring RUV-III
updated 4.6 years ago by ▴ 20 • written 5.3 years ago by ▴ 30
0
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9
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1.8k
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DESeq2 with nanostring data
deseq2 nanostring
4.9 years ago acs1990 ▴ 10
0
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4
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1.2k
views
Setting up contrasts with 'limma', patient data, small number of repeats
limma nanostring contrasts
updated 5.2 years ago by 51k • written 5.2 years ago by • 0
16
votes
40
replies
9.9k
views
Can NanoString data be analyzed using DESeq2?
NanoString Differential Expressed Genes Analysis DESeq2
updated 2.9 years ago by ▴ 10 • written 5.3 years ago by ▴ 50
1
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1
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1.7k
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GSVA with NanoString nCounter data
GSVA Nanostring
6.4 years ago • updated 5.6 years ago SB • 0
0
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5
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1.5k
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NanoStringDiff analysis with confounding factors
differential gene expression nanostring confounding factors
updated 5.9 years ago by 67k • written 5.9 years ago by • 0
1
vote
6
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2.2k
views
How to access normalized data in the NanoStringDiff package?
nanostringdiff nanostring NanoStringDiff
updated 6.5 years ago by 67k • written 6.5 years ago by ▴ 170
9
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13
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6.2k
views
DESeq2 on NanoString Data
deseq2 nanostring
updated 6.5 years ago by 42k • written 6.5 years ago by ▴ 170
1
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1
reply
1.2k
views
DESeq2 confounding cartridge
deseq2 confounders nanostring rnaseq differential gene expression
updated 6.7 years ago by 42k • written 6.7 years ago by • 0
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0
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1.5k
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design matrix and contrast for paired experiment using NanoStringDiff for nCounter data
nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter
7.3 years ago c.kohler • 0
3
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8
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3.7k
views
Using DESeq2 with Nanostring data (for VST only)
deseq2 variancestabilizingtransformation nanostring
updated 7.6 years ago by 42k • written 7.6 years ago by ▴ 10
2
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0
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2.1k
views
NanoString Data Normalization Revisited
nanostring normalization
9.1 years ago alakatos ▴ 130
24
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12
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13k
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Nanostring analysis with limma
nanostring limma
updated 9.6 years ago by ▴ 20 • written 9.6 years ago by ▴ 370
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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