Bioconductor NanoString

Showing : NanoString • reset

votes

replies

1.1k

views

GSVA Normalization BatchEffect GSVAdata NanoString

23 months ago Zhijie • 0

votes

replies

2.7k

views

ExpressionSet Assay NanoString Error Data

updated 2.4 years ago by James W. MacDonald 67k • written 2.4 years ago by junli1988 • 0

votes

replies

2.0k

views

NanoNormIter DifferentialExpression Housekeeping DESeq2 NanoString

updated 2.9 years ago by Michael Love 43k • written 2.9 years ago by argonvibio • 0

vote

replies

2.1k

views

plotRLE Nanostring RUVSeq DESEQ2

updated 4 months ago by BioinfGuru ▴ 70 • written 3.5 years ago by xiaofeiwang18266 ▴ 50

votes

replies

2.2k

views

NanoStringDiff NanoString nCounter DE analysis

updated 13 months ago by georgersmith • 0 • written 5.4 years ago by lim6432 ▴ 50

votes

1.9k

views

RUV Nanostring RUV-III

updated 4.7 years ago by hermidalc ▴ 20 • written 5.4 years ago by raf4 ▴ 30

votes

replies

1.8k

views

deseq2 nanostring

5.0 years ago acs1990 ▴ 10

votes

replies

1.2k

views

limma nanostring contrasts

updated 5.2 years ago by Gordon Smyth 52k • written 5.2 years ago by uridavid.akavia • 0

votes

replies

10k

views

NanoString Differential Expressed Genes Analysis DESeq2

updated 3.0 years ago by Clara ▴ 10 • written 5.4 years ago by lim6432 ▴ 50

vote

1.7k

views

GSVA Nanostring

6.4 years ago • updated 5.7 years ago SB • 0

votes

replies

1.5k

views

differential gene expression nanostring confounding factors

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by Guillaume Robert • 0

vote

replies

2.3k

views

nanostringdiff nanostring NanoStringDiff

updated 6.5 years ago by James W. MacDonald 67k • written 6.5 years ago by casey.rimland ▴ 170

votes

replies

6.3k

views

deseq2 nanostring

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by casey.rimland ▴ 170

vote

1.2k

views

deseq2 confounders nanostring rnaseq differential gene expression

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by kim.malek88 • 0

votes

replies

1.5k

views

nanostring NanoStringDiff design and contrast matrix differential gene expression ncounter

7.4 years ago c.kohler • 0

votes

replies

3.8k

views

deseq2 variancestabilizingtransformation nanostring

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by johnmcma ▴ 10

votes

replies

2.1k

views

nanostring normalization

9.2 years ago alakatos ▴ 130

votes

replies

13k

views

nanostring limma

updated 9.6 years ago by ker61 ▴ 20 • written 9.7 years ago by mali salmon ▴ 370

18 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

Awards • All