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Release
•
reset
1
vote
2
replies
344
views
News:
Important: Bioconductor Release 3.22 Delayed
release
written 11 weeks ago by
shepherl
4.3k
2
votes
1
reply
532
views
News:
Bioconductor 3.22 Released!
release
Release
Bioconductor
Software
written 11 weeks ago by
shepherl
4.3k
0
votes
1
reply
729
views
News:
Bioconductor 3.22 Release Schedule
Devel
Release
Bioconductor
written 4 months ago by
shepherl
4.3k
2
votes
0
replies
955
views
News:
Bioconductor 3.21 is Released!
devel
release
Release
Devel
9 months ago
shepherl
4.3k
0
votes
1
reply
931
views
News:
List of Deprecated Packages for Bioc3.20
Release
Devel
Bioconductor
15 months ago • updated 9 months ago
shepherl
4.3k
0
votes
0
replies
564
views
News:
List of Deprecated Packages for Bioc3.21
devel
Release
release
Devel
9 months ago
shepherl
4.3k
0
votes
0
replies
679
views
News:
Bioconductor 3.21 Release Schedule Important Deadlines Approaching
Software
Release
release
9 months ago
shepherl
4.3k
1
vote
0
replies
1.6k
views
News:
Bioconductor 3.20 is Released!
Bioconductor
Release
Software
14 months ago
shepherl
4.3k
0
votes
11
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
22 months ago • updated 15 months ago
shepherl
4.3k
3
votes
4
replies
3.1k
views
News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 8 months ago by
randyprice13102000
• 0 • written 16 months ago by
shepherl
4.3k
4
votes
0
replies
1.7k
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
20 months ago
shepherl
4.3k
0
votes
0
replies
856
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
21 months ago
shepherl
4.3k
0
votes
1
reply
1.8k
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
22 months ago
shepherl
4.3k
0
votes
1
reply
1.3k
views
Rcpp compilation error
Release
Rcpp
updated 22 months ago by
ATpoint
★ 5.0k • written 22 months ago by
Robert K. Bradley
▴ 40
0
votes
0
replies
1.3k
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
23 months ago
shepherl
4.3k
5
votes
1
reply
2.0k
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 2.2 years ago by
shepherl
4.3k
1
vote
4
replies
1.3k
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene
Bioconductor3.18
DifferentialExpression
release
updated 2.2 years ago by
Michael Love
43k • written 2.2 years ago by
Nadine
▴ 60
0
votes
4
replies
2.2k
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 2.2 years ago by
Guido Hooiveld
★ 4.1k • written 2.3 years ago by
shepherl
4.3k
1
vote
0
replies
1.7k
views
News:
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0
release
Annotation
2.3 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.6k
views
News:
Bioconductor 3.18 Release Schedule
Release
Software
release
2.4 years ago
shepherl
4.3k
1
vote
8
replies
2.2k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 6.8 years ago by
shepherl
4.3k
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
2.7 years ago
shepherl
4.3k
0
votes
0
replies
891
views
News:
Bioconductor Release 3.16 Code Freeze
release
Release
Bioconductor
2.8 years ago
shepherl
4.3k
0
votes
0
replies
1.4k
views
News:
Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release
db0
Annotation
2.8 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.1k
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
2.8 years ago
shepherl
4.3k
1
vote
0
replies
1.4k
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
3.2 years ago
shepherl
4.3k
0
votes
0
replies
970
views
News:
Last day to make commits before Release 3.16
Release
Devel
Bioconductor
release
devel
3.2 years ago
shepherl
4.3k
0
votes
2
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
3.2 years ago
shepherl
4.3k
0
votes
0
replies
1.2k
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
3.3 years ago
shepherl
4.3k
0
votes
0
replies
1.4k
views
News:
Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release
db0
annotation
3.3 years ago
kayla.interdonato
▴ 160
4
votes
0
replies
1.3k
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
3.4 years ago • updated 3.3 years ago
shepherl
4.3k
8
votes
0
replies
1.4k
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
3.7 years ago
shepherl
4.3k
0
votes
4
replies
1.9k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
3.8 years ago • updated 3.2 years ago
shepherl
4.3k
0
votes
1
reply
1.6k
views
News:
Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation
release
db0
3.8 years ago • updated 3.7 years ago
kayla.interdonato
▴ 160
0
votes
0
replies
1.1k
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
3.8 years ago
shepherl
4.3k
1
vote
0
replies
1.4k
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
3.9 years ago
shepherl
4.3k
0
votes
5
replies
2.1k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
4.3 years ago • updated 3.7 years ago
shepherl
4.3k
8
votes
0
replies
1.5k
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
4.2 years ago
shepherl
4.3k
0
votes
0
replies
1.3k
views
News:
New Package Submission Deadline for Bioc Release 3.14
newpackage
Deadline
Release
Submission
4.3 years ago
shepherl
4.3k
1
vote
0
replies
1.4k
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
4.3 years ago
shepherl
4.3k
7
votes
6
replies
2.6k
views
How to obtain summary statistics for all Bioc releases
bioconductor
release
7.6 years ago
Robert Ivanek
▴ 750
5
votes
0
replies
1.4k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
4.7 years ago • updated 4.6 years ago
shepherl
4.3k
0
votes
0
replies
1.1k
views
News:
Last day to make commit before the RELEASE_3_13
Release
Devel
devel
release
Bioc3.13
4.7 years ago
shepherl
4.3k
0
votes
3
replies
1.7k
views
Bioconductor Release AMI's
Release
release
AWS
AMI
Bioconductor
updated 4.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 4.7 years ago by
shepherl
4.3k
1
vote
0
replies
1.4k
views
News:
Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation
release
db0
4.7 years ago
kayla.interdonato
▴ 160
1
vote
1
reply
1.6k
views
Rsync Access
release
rsync
873
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
workmanld
▴ 10
0
votes
1
reply
1.5k
views
News:
Bioconductor 3.13 New Package Submission Deadline
release
Submission
newpackage
Release
Deadline
4.8 years ago • updated 4.7 years ago
shepherl
4.3k
0
votes
0
replies
1.3k
views
News:
Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor
release
devel
deadline
4.8 years ago • updated 4.7 years ago
shepherl
4.3k
0
votes
0
replies
1.4k
views
News:
Bioconductor Release 3.13 Schedule
release
Release
4.8 years ago • updated 4.7 years ago
shepherl
4.3k
4
votes
0
replies
1.4k
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
5.2 years ago
shepherl
4.3k
133 results • Page
1 of 3
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Replies
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
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53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
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53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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