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News: Bioconductor 3.22 Release Schedule
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1 day ago shepherl 4.2k
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News: Bioconductor 3.21 is Released!
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5 months ago shepherl 4.2k
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653
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News: List of Deprecated Packages for Bioc3.20
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11 months ago • updated 5 months ago shepherl 4.2k
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News: List of Deprecated Packages for Bioc3.21
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5 months ago shepherl 4.2k
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News: Bioconductor 3.21 Release Schedule Important Deadlines Approaching
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5 months ago shepherl 4.2k
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News: Bioconductor 3.20 is Released!
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10 months ago shepherl 4.2k
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News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
18 months ago • updated 11 months ago shepherl 4.2k
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News: Bioconductor 3.20 Release Schedule
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updated 4 months ago by • 0 • written 12 months ago by 4.2k
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News: Bioconductor 3.19 is Released!
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16 months ago shepherl 4.2k
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742
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News: Important Release 3.18 Freeze Announcment
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17 months ago shepherl 4.2k
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News: Bioconductor 3.19 Release Schedule
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18 months ago • updated 17 months ago shepherl 4.2k
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Rcpp compilation error
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updated 18 months ago by ★ 4.9k • written 18 months ago by ▴ 40
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News: Note about packages submitted for Bioconductor 3.19
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19 months ago shepherl 4.2k
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News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 23 months ago by 4.2k
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rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 22 months ago by 43k • written 22 months ago by ▴ 60
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News: Important Bioconductor Release 3.18 deadlines this week
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updated 23 months ago by ★ 4.1k • written 23 months ago by 4.2k
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
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24 months ago kayla.interdonato ▴ 160
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News: Bioconductor 3.18 Release Schedule
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2.0 years ago shepherl 4.2k
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News: Final List of Deprecated Package Bioc 3.9
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written 6.5 years ago by 4.2k
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News: Bioconductor 3.17 is Released!
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2.4 years ago shepherl 4.2k
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News: Bioconductor Release 3.16 Code Freeze
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2.4 years ago shepherl 4.2k
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News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
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2.5 years ago kayla.interdonato ▴ 160
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News: Bioconductor 3.17 Release Schedule
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2.5 years ago shepherl 4.2k
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News: Bioconductor 3.16 is Released!
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2.9 years ago shepherl 4.2k
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News: Last day to make commits before Release 3.16
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News: List of Deprecated Packages for Bioc3.16
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2.9 years ago shepherl 4.2k
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
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2.9 years ago shepherl 4.2k
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
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3.0 years ago kayla.interdonato ▴ 160
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News: Bioconductor Release 3.16 Schedule
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3.0 years ago shepherl 4.2k
8
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News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
3.4 years ago shepherl 4.2k
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1.8k
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News: List of Deprecated Packages for Bioc3.15
Devel Deprecation Release Bioconductor
3.5 years ago • updated 2.9 years ago shepherl 4.2k
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News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.4 years ago kayla.interdonato ▴ 160
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
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3.5 years ago shepherl 4.2k
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News: Bioconductor Release 3.15 Schedule
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3.5 years ago shepherl 4.2k
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News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
3.9 years ago • updated 3.4 years ago shepherl 4.2k
8
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News: Bioconductor 3.14 is Released!
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3.9 years ago shepherl 4.2k
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News: New Package Submission Deadline for Bioc Release 3.14
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4.0 years ago shepherl 4.2k
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News: Bioconductor Release 3.14 Schedule
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4.0 years ago shepherl 4.2k
7
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6
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2.4k
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How to obtain summary statistics for all Bioc releases
bioconductor release
7.3 years ago Robert Ivanek ▴ 750
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News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
4.3 years ago shepherl 4.2k
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News: Last day to make commit before the RELEASE_3_13
Release Devel devel release Bioc3.13
4.3 years ago shepherl 4.2k
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1.6k
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Bioconductor Release AMI's
Release release AWS AMI Bioconductor
updated 4.3 years ago by 6.7k • written 4.4 years ago by 4.2k
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1.3k
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News: Bioconductor 3.13 db0s, OrgDbs and TxDbs now available
annotation release db0
4.4 years ago kayla.interdonato ▴ 160
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1.4k
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Rsync Access
release rsync 873
updated 4.4 years ago by 25k • written 4.4 years ago by ▴ 10
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News: Bioconductor 3.13 New Package Submission Deadline
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4.4 years ago shepherl 4.2k
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News: Bioconductor Release 3.12 and Bioconductor Devel 3.13 Code Freeze Deadlines!
Bioconductor release devel deadline
4.4 years ago shepherl 4.2k
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1.3k
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News: Bioconductor Release 3.13 Schedule
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4.4 years ago shepherl 4.2k
4
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1.3k
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News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
4.9 years ago shepherl 4.2k
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.9 years ago kayla.interdonato ▴ 160
1
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News: New Package Submission Deadline for Bioc Release 3.12
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5.0 years ago shepherl 4.2k
131 results • Page 1 of 3
Recent ...
Replies
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It may not be that common for bulk RNA-Seq, but in my experience it's very common for bulk miRNA-Seq.
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Nice. That's great to hear. `sva` was actually the next step I was planning to try. My colleagues haven't seen this kind of pattern before …
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by James W. MacDonald 68k
It is not uncommon for library size to be apparent in an MDS plot. You can use `sva` or `RUV` to account for that.
Comment: p-adjusted values in multiple comparisons by Josh • 0
Yes, using lmFit with block and duplicateCorrelation is appropriate; mobile data collection can illustrate blocking importance. First estim…
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0
Understood, thanks. The issue I'm seeing is that even after normalization, the MDSplot still orders samples by library size. I suspect cell…
Votes
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: How to construct a BSgenome object from a custom genome assembly using BSgenomeF
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