Showing : Software • reset
2
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226
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News: Bioconductor 3.22 Released!
release Release Bioconductor Software
written 6 weeks ago by 4.2k
0
votes
0
replies
582
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News: Bioconductor 3.21 Release Schedule Important Deadlines Approaching
Software Release release
8 months ago shepherl 4.2k
1
vote
0
replies
1.4k
views
News: Bioconductor 3.20 is Released!
Bioconductor Release Software
13 months ago shepherl 4.2k
0
votes
11
replies
2.6k
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
21 months ago • updated 14 months ago shepherl 4.2k
3
votes
4
replies
2.8k
views
News: Bioconductor 3.20 Release Schedule
software release Release
updated 7 months ago by • 0 • written 15 months ago by 4.2k
0
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1
reply
1.6k
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Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
written 3.1 years ago by ★ 3.4k
4
votes
0
replies
1.6k
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
19 months ago shepherl 4.2k
0
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1
reply
1.6k
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News: Bioconductor 3.19 Release Schedule
Release release Software
21 months ago shepherl 4.2k
5
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1
reply
1.9k
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 2.1 years ago by 4.2k
2
votes
1
reply
2.4k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 2.2 years ago by ★ 5.0k • written 2.3 years ago by ▴ 10
0
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0
replies
1.6k
views
News: Bioconductor 3.18 Release Schedule
Release Software release
2.3 years ago shepherl 4.2k
0
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1
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806
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Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
1
vote
8
replies
2.1k
views
News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 6.7 years ago by 4.2k
0
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0
replies
1.2k
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News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
2.6 years ago shepherl 4.2k
0
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0
replies
1.1k
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News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
2.8 years ago shepherl 4.2k
3
votes
6
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1.9k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 2.7 years ago by • 0 • written 2.8 years ago by 4.2k
1
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0
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1.4k
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News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
3.1 years ago shepherl 4.2k
0
votes
0
replies
1.2k
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
3.2 years ago shepherl 4.2k
8
votes
0
replies
1.4k
views
News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
3.6 years ago shepherl 4.2k
0
votes
0
replies
1.0k
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
3.7 years ago shepherl 4.2k
0
votes
5
replies
2.1k
views
News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
4.2 years ago • updated 3.7 years ago shepherl 4.2k
8
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0
replies
1.5k
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News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
4.1 years ago shepherl 4.2k
0
votes
0
replies
1.4k
views
Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
4.3 years ago Daniel • 0
5
votes
0
replies
1.4k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
4.6 years ago shepherl 4.2k
2
votes
2
replies
2.1k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
5.0 years ago • updated 4.6 years ago shepherl 4.2k
4
votes
0
replies
1.4k
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
5.1 years ago shepherl 4.2k
1
vote
2
replies
1.9k
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
5.2 years ago shepherl 4.2k
0
votes
0
replies
1.5k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
5.2 years ago Vincent J. Carey, Jr. 6.7k
2
votes
4
replies
1.7k
views
Bioconductor package development
package R software development
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
3
votes
0
replies
1.9k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
5.3 years ago • updated 5.2 years ago shepherl 4.2k
0
votes
2
replies
1.3k
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 5.3 years ago by 4.2k • written 5.4 years ago by • 0
0
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0
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1.4k
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
5.5 years ago shepherl 4.2k
0
votes
2
replies
1.3k
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
0
votes
3
replies
1.6k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.6 years ago by ▴ 160 • written 5.7 years ago by 4.2k
4
votes
0
replies
1.2k
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
5.6 years ago shepherl 4.2k
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.8 years ago shepherl 4.2k
0
votes
1
reply
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
6.0 years ago • updated 5.9 years ago shepherl 4.2k
1
vote
1
reply
1.6k
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by ▴ 40
0
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0
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1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
6.1 years ago shepherl 4.2k
0
votes
2
replies
2.6k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
6.2 years ago • updated 6.1 years ago shepherl 4.2k
2
votes
2
replies
1.5k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
6.1 years ago shepherl 4.2k
6
votes
0
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1.4k
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
6.1 years ago shepherl 4.2k
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.3 years ago • updated 6.2 years ago shepherl 4.2k
2
votes
0
replies
2.8k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
6.2 years ago Laurent Gatto 1.6k
0
votes
1
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1.4k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
6.4 years ago • updated 6.3 years ago shepherl 4.2k
0
votes
0
replies
1.1k
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
6.5 years ago jmaanaki • 0
0
votes
3
replies
1.6k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.5 years ago shepherl 4.2k
0
votes
1
reply
1.3k
views
News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
6.6 years ago shepherl 4.2k
0
votes
1
reply
1.7k
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
6.8 years ago shepherl 4.2k
0
votes
1
reply
1.6k
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
57 results • Page 1 of 2
Recent ...
Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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