Showing : XCMS • reset
0
votes
4
replies
2.8k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
8.3 years ago Titan • 0
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
8.3 years ago Titan • 0
0
votes
3
replies
2.1k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
8.3 years ago Titan • 0
0
votes
3
replies
2.4k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
9.0 years ago Johannes Rainer ★ 2.0k
0
votes
2
replies
1.4k
views
get LCMS masses with more significant figures with xcmsRaw()
R xcms xcmsRaw LC
updated 8.8 years ago by ★ 2.0k • written 8.8 years ago by • 0
0
votes
3
replies
3.7k
views
how to import a CDF file in R ?
xcms metaMS MSeasy r
updated 8.6 years ago by • 0 • written 8.6 years ago by ▴ 80
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
8.3 years ago Titan • 0
0
votes
2
replies
1.2k
views
Error: BiocParallel errors
xcms msdata BiocParallel
8 months ago mavamay • 0
2
votes
4
replies
1.3k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.2 years ago james.dalgleish ▴ 30
0
votes
5
replies
1.9k
views
XCMS for LC-MS
xcms xcms
updated 10.4 years ago by ▴ 20 • written 10.4 years ago by ★ 13k
1
vote
3
replies
1.2k
views
Unable to set colors in plotrt function in xcms package
xcms bug
9.0 years ago Johannes Rainer ★ 2.0k
0
votes
6
replies
2.7k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
8.0 years ago dfrtyu • 0
0
votes
6
replies
2.0k
views
error when loading mzR
xcms mzR xcms mzR
updated 10.8 years ago by ★ 13k • written 10.8 years ago by ★ 13k
0
votes
1
reply
933
views
Too many open files error with groupName = "all" in biocLite() call on Apple OS X
Cancer Breast Biobase AnnBuilder xcms Cancer Breast Biobase AnnBuilder xcms
updated 17.8 years ago by ★ 7.4k • written 17.8 years ago by ▴ 310
0
votes
1
reply
1.7k
views
installing xcms package for R 64-bit
GO Cancer cdf xcms GO Cancer cdf xcms
updated 14.4 years ago by ▴ 10 • written 14.4 years ago by ▴ 40
0
votes
1
reply
995
views
help
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.7k
views
problems installing xcms package
cdf xcms cdf xcms
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 360
0
votes
3
replies
2.4k
views
XCMS / mzR / Rcpp dependency issue
xcms xcms
updated 11.9 years ago by 1.6k • written 11.9 years ago by ▴ 30
0
votes
3
replies
3.4k
views
Installation of XCMS / mzR failed
cdf xcms BiocInstaller cdf xcms BiocInstaller
updated 11.8 years ago by 65k • written 11.8 years ago by ▴ 20
0
votes
3
replies
2.5k
views
XCMS query regarding mzXML
xcms xcms
updated 10.8 years ago by 1.6k • written 10.8 years ago by ▴ 570
1
vote
4
replies
2.2k
views
How to get from xcmsRaw to a xcmsSet
xcms metabolomics
updated 9.0 years ago by ▴ 70 • written 9.0 years ago by ★ 2.0k
2
votes
9
replies
2.7k
views
Unexpected total ion count (TIC) with xcms package
xcms metabolomics
updated 9.0 years ago by ▴ 70 • written 9.0 years ago by ★ 2.0k
2
votes
1
reply
2.1k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.8 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.6k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 7.9 years ago by ▴ 20 • written 7.9 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
1
vote
1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.8 years ago by 1.6k • written 6.8 years ago by • 0
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
3
votes
1
reply
954
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by ▴ 10
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
0
votes
3
replies
1.5k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
3
votes
2
replies
832
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.9 years ago by ★ 2.0k • written 3.9 years ago by ▴ 30
0
votes
4
replies
1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
0
votes
1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
1
vote
4
replies
1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 30
0
votes
4
replies
15k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
votes
2
replies
1.4k
views
colMax is not exported from the xcms package
xcms
3.0 years ago Habil Zare ▴ 200
0
votes
1
reply
607
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 15 months ago by • 0 • written 18 months ago by ▴ 10
0
votes
1
reply
468
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
2
votes
1
reply
1.2k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.8 years ago garfield320 ▴ 30
0
votes
0
replies
665
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.0 years ago mba • 0
50 results • Page 1 of 1
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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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