Showing : XCMS • reset
0
votes
2
replies
188
views
Error: BiocParallel errors
xcms msdata BiocParallel
24 days ago • updated 18 days ago mavamay • 0
0
votes
0
replies
140
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
3 months ago Abrianna • 0
0
votes
1
reply
225
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 5 months ago by ★ 3.4k • written 5 months ago by • 0
0
votes
0
replies
148
views
XCMS normalization
xcms
7 months ago T.RU • 0
0
votes
1
reply
375
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 7 months ago by • 0 • written 11 months ago by ▴ 10
0
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0
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308
views
dont find xcmsSet for peak analysis
xcms
11 months ago aline.lafise • 0
1
vote
4
replies
1.2k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 13 months ago by • 0 • written 2.9 years ago by ▴ 30
0
votes
0
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474
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
16 months ago mba • 0
5
votes
5
replies
761
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 17 months ago by ★ 2.0k • written 17 months ago by ▴ 20
0
votes
3
replies
949
views
Warning messages during intallation of XCMS
xcms Install
updated 19 months ago by 63k • written 19 months ago by • 0
0
votes
0
replies
453
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
22 months ago noerman • 0
0
votes
4
replies
11k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 13 months ago by 63k • written 2.1 years ago by • 0
0
votes
2
replies
1.1k
views
colMax is not exported from the xcms package
xcms
2.3 years ago Habil Zare ▴ 170
0
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0
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493
views
Mass spec intensity difference
xcms
2.4 years ago Phytochem • 0
0
votes
0
replies
482
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
2.5 years ago abrsoule ▴ 30
0
votes
0
replies
1.1k
views
BiocParallel errors with xcms
BiocParallel xcms
2.5 years ago Yuki ▴ 10
1
vote
3
replies
742
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 2.9 years ago by ★ 2.0k • written 2.9 years ago by ▴ 10
0
votes
1
reply
1.0k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 2.9 years ago by 1.6k • written 2.9 years ago by • 0
0
votes
3
replies
803
views
Use xcms but mzR occurs error
software error xcms
updated 3.1 years ago by 3.8k • written 3.1 years ago by • 0
0
votes
4
replies
1.1k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.1 years ago by 1.6k • written 3.1 years ago by • 0
3
votes
2
replies
599
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by ▴ 20
1
vote
2
replies
798
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.3 years ago by ▴ 20 • written 3.3 years ago by ▴ 20
0
votes
3
replies
998
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by • 0
2
votes
13
replies
1.5k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
4.0 years ago abrsoule ▴ 30
0
votes
5
replies
959
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.1 years ago by 1.6k • written 4.1 years ago by • 0
2
votes
6
replies
1.2k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.2 years ago by ★ 2.0k • written 4.2 years ago by ▴ 10
0
votes
1
reply
1.0k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.2 years ago garfield320 ▴ 30
2
votes
1
reply
899
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
4.5 years ago abrsoule ▴ 30
0
votes
4
replies
2.5k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
4.5 years ago lmg • 0
0
votes
0
replies
835
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
4.6 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
1.1k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 4.7 years ago by • 0 • written 4.8 years ago by ★ 2.0k
0
votes
4
replies
1.1k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
5.1 years ago cpataki • 0
0
votes
9
replies
2.5k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.1 years ago goh • 0
3
votes
1
reply
758
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.1 years ago by 1.6k • written 5.1 years ago by • 0
0
votes
1
reply
1.3k
views
XCMS for GC-MS
xcms GC-MS
5.1 years ago Joe • 0
0
votes
4
replies
1.4k
views
Chromatographic peak detection failed for all files
xcms
5.2 years ago yuchiu • 0
0
votes
1
reply
1.3k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 5.4 years ago by ★ 2.0k • written 5.4 years ago by • 0
2
votes
4
replies
1.0k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
5.6 years ago • updated 5.5 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.5k
views
ReadMSData problem with xcms
xcms readmsdata
updated 5.9 years ago by ★ 2.0k • written 5.9 years ago by ▴ 30
1
vote
5
replies
2.7k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
5.9 years ago bhgyu ▴ 30
5
votes
7
replies
1.9k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 5.9 years ago by ★ 2.0k • written 5.9 years ago by ▴ 30
2
votes
1
reply
1.9k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.2 years ago by • 0 • written 7.6 years ago by ▴ 20
0
votes
2
replies
973
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.2 years ago by 1.6k • written 6.2 years ago by • 0
0
votes
0
replies
789
views
xcmsFragments extract product fragment
xcms xcms2
6.2 years ago riccardo.romoli • 0
0
votes
1
reply
1.3k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 6.5 years ago by 48k • written 6.5 years ago by • 0
1
vote
1
reply
1.0k
views
xcms warning message
R xcms warning message
updated 6.8 years ago by ★ 2.0k • written 6.8 years ago by • 0
0
votes
1
reply
1.1k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
6.8 years ago buescher • 0
1
vote
7
replies
1.9k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 6.8 years ago by ★ 2.0k • written 6.8 years ago by • 0
0
votes
1
reply
980
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 6.9 years ago by ★ 2.0k • written 6.9 years ago by • 0
0
votes
1
reply
1.2k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.0 years ago by 63k • written 7.0 years ago by • 0
50 results • Page 1 of 1
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Replies
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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