Showing : XCMS • reset
0
votes
0
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80
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
3 months ago hp71727 ▴ 10
0
votes
0
replies
169
views
dont find xcmsSet for peak analysis
xcms
3 months ago aline.lafise • 0
1
vote
4
replies
885
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 6 months ago by • 0 • written 2.2 years ago by ▴ 30
0
votes
0
replies
264
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
9 months ago mba • 0
5
votes
5
replies
481
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 10 months ago by ★ 2.0k • written 10 months ago by ▴ 20
0
votes
3
replies
603
views
Warning messages during intallation of XCMS
xcms Install
updated 11 months ago by 62k • written 11 months ago by • 0
0
votes
0
replies
263
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
14 months ago noerman • 0
0
votes
4
replies
6.4k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 5 months ago by 62k • written 17 months ago by • 0
0
votes
2
replies
791
views
colMax is not exported from the xcms package
xcms
20 months ago Habil Zare ▴ 170
0
votes
0
replies
343
views
Mass spec intensity difference
xcms
21 months ago Phytochem • 0
0
votes
0
replies
316
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
22 months ago abrsoule ▴ 30
0
votes
0
replies
774
views
BiocParallel errors with xcms
BiocParallel xcms
22 months ago Yuki ▴ 10
1
vote
3
replies
555
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 2.2 years ago by ★ 2.0k • written 2.2 years ago by ▴ 10
0
votes
1
reply
710
views
convert from profile to centroid.
MassSpectrometry xcms
updated 2.3 years ago by 1.6k • written 2.3 years ago by • 0
0
votes
3
replies
543
views
Use xcms but mzR occurs error
software error xcms
updated 2.4 years ago by 3.7k • written 2.4 years ago by • 0
0
votes
4
replies
831
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 2.4 years ago by 1.6k • written 2.4 years ago by • 0
3
votes
2
replies
432
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 2.6 years ago by ★ 2.0k • written 2.6 years ago by ▴ 20
1
vote
2
replies
513
views
Baseline correction for GC-MS data
XCMS metaMS
updated 2.6 years ago by ▴ 20 • written 2.6 years ago by ▴ 20
0
votes
3
replies
651
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 2.8 years ago by ★ 2.0k • written 2.8 years ago by • 0
2
votes
13
replies
1.2k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
3.4 years ago abrsoule ▴ 30
0
votes
5
replies
751
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 3.4 years ago by 1.6k • written 3.4 years ago by • 0
2
votes
6
replies
970
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 3.5 years ago by ★ 2.0k • written 3.5 years ago by ▴ 10
0
votes
1
reply
847
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
3.5 years ago garfield320 ▴ 30
2
votes
1
reply
708
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
3.8 years ago abrsoule ▴ 30
0
votes
4
replies
2.2k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
3.8 years ago lmg • 0
0
votes
0
replies
607
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
3.9 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
934
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 4.1 years ago by • 0 • written 4.2 years ago by ★ 2.0k
0
votes
4
replies
897
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
4.4 years ago cpataki • 0
0
votes
9
replies
2.0k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
4.4 years ago goh • 0
3
votes
1
reply
608
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 4.4 years ago by 1.6k • written 4.4 years ago by • 0
0
votes
1
reply
1.0k
views
XCMS for GC-MS
xcms GC-MS
4.5 years ago Joe • 0
0
votes
4
replies
998
views
Chromatographic peak detection failed for all files
xcms
4.6 years ago yuchiu • 0
0
votes
1
reply
1.1k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by • 0
2
votes
4
replies
831
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
4.9 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.2k
views
ReadMSData problem with xcms
xcms readmsdata
updated 5.2 years ago by ★ 2.0k • written 5.2 years ago by ▴ 30
1
vote
5
replies
2.3k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
5.3 years ago bhgyu ▴ 30
5
votes
7
replies
1.5k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 5.3 years ago by ★ 2.0k • written 5.3 years ago by ▴ 30
2
votes
1
reply
1.8k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 5.6 years ago by • 0 • written 7.0 years ago by ▴ 20
0
votes
2
replies
788
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 5.6 years ago by 1.6k • written 5.6 years ago by • 0
0
votes
0
replies
653
views
xcmsFragments extract product fragment
xcms xcms2
5.6 years ago riccardo.romoli • 0
0
votes
1
reply
1.1k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 5.8 years ago by 47k • written 5.8 years ago by • 0
1
vote
1
reply
874
views
xcms warning message
R xcms warning message
updated 6.1 years ago by ★ 2.0k • written 6.1 years ago by • 0
0
votes
1
reply
933
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
6.2 years ago buescher • 0
1
vote
7
replies
1.7k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 6.2 years ago by ★ 2.0k • written 6.2 years ago by • 0
0
votes
1
reply
831
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 6.2 years ago by ★ 2.0k • written 6.2 years ago by • 0
0
votes
1
reply
982
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 6.3 years ago by 62k • written 6.3 years ago by • 0
0
votes
1
reply
1.1k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 6.7 years ago by ▴ 20 • written 6.7 years ago by • 0
0
votes
6
replies
2.0k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
6.8 years ago dfrtyu • 0
0
votes
4
replies
1.8k
views
Segfault error when loading xcms and mzR packages
software error mzr xcms
6.9 years ago pmartin • 0
0
votes
0
replies
884
views
fillPeaks not calculating "intb" values.
xcms metabolomics
7.0 years ago Johannes Rainer ★ 2.0k
50 results • Page 1 of 1
Recent ...
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Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by jeffbrick852 • 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs by James W. MacDonald 62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards • All
Scholar to James W. MacDonald 62k
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Popular Question to shepherl 3.4k
Scholar to Gordon Smyth 47k
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