Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
XCMS
•
reset
0
votes
0
replies
80
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity
Metabolomics
Bioconductor
xcms
spectralMatching
3 months ago
hp71727
▴ 10
0
votes
0
replies
169
views
dont find xcmsSet for peak analysis
xcms
3 months ago
aline.lafise
• 0
1
vote
4
replies
885
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 6 months ago by
jiahui
• 0 • written 2.2 years ago by
garfield320
▴ 30
0
votes
0
replies
264
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO
msdata
xcms
9 months ago
mba
• 0
5
votes
5
replies
481
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms
Spectra
updated 10 months ago by
Johannes Rainer
★ 2.0k • written 10 months ago by
e.terlova
▴ 20
0
votes
3
replies
603
views
Warning messages during intallation of XCMS
xcms
Install
updated 11 months ago by
James W. MacDonald
62k • written 11 months ago by
Fanny-shufan
• 0
0
votes
0
replies
263
views
BiocParallel errors in XCMS peak-picking
BiocParallel
xcms
biocparallel
14 months ago
noerman
• 0
0
votes
4
replies
6.4k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R
pheatmap
xcms
updated 5 months ago by
James W. MacDonald
62k • written 17 months ago by
onokaisaac
• 0
0
votes
2
replies
791
views
colMax is not exported from the xcms package
xcms
20 months ago
Habil Zare
▴ 170
0
votes
0
replies
343
views
Mass spec intensity difference
xcms
21 months ago
Phytochem
• 0
0
votes
0
replies
316
views
Running > 100 samples per group - memory issues
xcms
memory
findchrompeaks
22 months ago
abrsoule
▴ 30
0
votes
0
replies
774
views
BiocParallel errors with xcms
BiocParallel
xcms
22 months ago
Yuki
▴ 10
1
vote
3
replies
555
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 2.2 years ago by
Johannes Rainer
★ 2.0k • written 2.2 years ago by
Yuki
▴ 10
0
votes
1
reply
710
views
convert from profile to centroid.
MassSpectrometry
xcms
updated 2.3 years ago by
Laurent Gatto
1.6k • written 2.3 years ago by
dneu1002
• 0
0
votes
3
replies
543
views
Use xcms but mzR occurs error
software error
xcms
updated 2.4 years ago by
Kevin Blighe
3.7k • written 2.4 years ago by
1227450726
• 0
0
votes
4
replies
831
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
updated 2.4 years ago by
Laurent Gatto
1.6k • written 2.4 years ago by
kramerl
• 0
3
votes
2
replies
432
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 2.6 years ago by
Johannes Rainer
★ 2.0k • written 2.6 years ago by
julien.kermorvant
▴ 20
1
vote
2
replies
513
views
Baseline correction for GC-MS data
XCMS
metaMS
updated 2.6 years ago by
ron.wehrens
▴ 20 • written 2.6 years ago by
julien.kermorvant
▴ 20
0
votes
3
replies
651
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS
LC-MS
LC-MS/MS
Alignment
updated 2.8 years ago by
Johannes Rainer
★ 2.0k • written 2.8 years ago by
ljveillon
• 0
2
votes
13
replies
1.2k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms
adjustRtime
parameters
scantime error
biocparallel error
3.4 years ago
abrsoule
▴ 30
0
votes
5
replies
751
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 3.4 years ago by
Laurent Gatto
1.6k • written 3.4 years ago by
pol.soladelossantos
• 0
2
votes
6
replies
970
views
xcms centwave roiList error
roiList
xcms
centwave
XIC
updated 3.5 years ago by
Johannes Rainer
★ 2.0k • written 3.5 years ago by
roxana
▴ 10
0
votes
1
reply
847
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r
xcms
3.5 years ago
garfield320
▴ 30
2
votes
1
reply
708
views
mzR unable to open uncorrupted mzXML file
software error
mzR
xcms
3.8 years ago
abrsoule
▴ 30
0
votes
4
replies
2.2k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
3.8 years ago
lmg
• 0
0
votes
0
replies
607
views
Job:
Postdoctoral researcher in Computational Metabolomics
metabolomics
xcms
Job
3.9 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
934
views
Job:
Postdoctoral researcher in Computational Metabolomics
xcms
metabolomics
population
metabolism
job
Job
updated 4.1 years ago by
Resume101
• 0 • written 4.2 years ago by
Johannes Rainer
★ 2.0k
0
votes
4
replies
897
views
Intensity discrepancy between raw data and XCMS output
xcms
xcmsset
intensity
4.4 years ago
cpataki
• 0
0
votes
9
replies
2.0k
views
Error 'names' attribute must be the same length as the vector xcms
xcms
xcms3
mzxml
4.4 years ago
goh
• 0
3
votes
1
reply
608
views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
updated 4.4 years ago by
Laurent Gatto
1.6k • written 4.4 years ago by
goh
• 0
0
votes
1
reply
1.0k
views
XCMS for GC-MS
xcms
GC-MS
4.5 years ago
Joe
• 0
0
votes
4
replies
998
views
Chromatographic peak detection failed for all files
xcms
4.6 years ago
yuchiu
• 0
0
votes
1
reply
1.1k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 4.8 years ago by
Johannes Rainer
★ 2.0k • written 4.8 years ago by
johnhamre3
• 0
2
votes
4
replies
831
views
Using massifquant for peak detection of generic matrix data?
xcms
kalman
centwave
yamss
4.9 years ago
james.dalgleish
▴ 30
1
vote
2
replies
2.2k
views
ReadMSData problem with xcms
xcms
readmsdata
updated 5.2 years ago by
Johannes Rainer
★ 2.0k • written 5.2 years ago by
bhgyu
▴ 30
1
vote
5
replies
2.3k
views
'names' attribute [12] must be the same length as the vector [6]
R
xcms
vector
5.3 years ago
bhgyu
▴ 30
5
votes
7
replies
1.5k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 5.3 years ago by
Johannes Rainer
★ 2.0k • written 5.3 years ago by
bhgyu
▴ 30
2
votes
1
reply
1.8k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 5.6 years ago by
wssdandan2009
• 0 • written 7.0 years ago by
dannel025
▴ 20
0
votes
2
replies
788
views
Problem with mzR and/or Rcpp?
mzr rcpp
mzr
rcpp
XCMS
updated 5.6 years ago by
Laurent Gatto
1.6k • written 5.6 years ago by
elabiead
• 0
0
votes
0
replies
653
views
xcmsFragments extract product fragment
xcms
xcms2
5.6 years ago
riccardo.romoli
• 0
0
votes
1
reply
1.1k
views
New to mass spec data analysis
data analysis
xcms
Tutorial
updated 5.8 years ago by
Gordon Smyth
47k • written 5.8 years ago by
Dan_reichert
• 0
1
vote
1
reply
874
views
xcms warning message
R
xcms
warning message
updated 6.1 years ago by
Johannes Rainer
★ 2.0k • written 6.1 years ago by
deepalikale2007
• 0
0
votes
1
reply
933
views
error when reading .mzML with xcms::xcmsSet
software error
R
mzR
xcms
6.2 years ago
buescher
• 0
1
vote
7
replies
1.7k
views
Can XCMS output continuum/profile data to netCDF format?
xcms
convert
protein
updated 6.2 years ago by
Johannes Rainer
★ 2.0k • written 6.2 years ago by
ray.bacala
• 0
0
votes
1
reply
831
views
get LCMS masses with more significant figures
source code
xcms
m/z
groupval
xcmsSet
updated 6.2 years ago by
Johannes Rainer
★ 2.0k • written 6.2 years ago by
juniormbarga
• 0
0
votes
1
reply
982
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 6.3 years ago by
James W. MacDonald
62k • written 6.3 years ago by
micheleserra
• 0
0
votes
1
reply
1.1k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 6.7 years ago by
ron.wehrens
▴ 20 • written 6.7 years ago by
lucie.conchou
• 0
0
votes
6
replies
2.0k
views
Help Error could not find function xcmsSet
xcms
metabolomics
mzr rcpp
ramp
6.8 years ago
dfrtyu
• 0
0
votes
4
replies
1.8k
views
Segfault error when loading xcms and mzR packages
software error
mzr
xcms
6.9 years ago
pmartin
• 0
0
votes
0
replies
884
views
fillPeaks not calculating "intb" values.
xcms
metabolomics
7.0 years ago
Johannes Rainer
★ 2.0k
50 results • Page
1 of 1
Recent ...
Replies
Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
jeffbrick852
• 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs
by
James W. MacDonald
62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Awards
• All
Scholar
to
James W. MacDonald
62k
Commentator
to
vs2001
▴ 30
Scholar
to
Mike Smith
★ 5.9k
Popular Question
to
shepherl
3.4k
Scholar
to
Gordon Smyth
47k
Locations
• All
Taiwan,
8 minutes ago
India,
20 minutes ago
Italy,
21 minutes ago
The city by the bay,
29 minutes ago
United States,
48 minutes ago
Traffic: 322 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6