Showing : XCMS • reset
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75
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BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
10 weeks ago noerman • 0
0
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1
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1.0k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 5 months ago by 3.4k • written 5 months ago by • 0
0
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2
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317
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colMax is not exported from the xcms package
xcms
8 months ago Habil Zare ▴ 170
0
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0
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158
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Mass spec intensity difference
xcms
9 months ago Phytochem • 0
0
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0
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153
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Running > 100 samples per group - memory issues
xcms memory findchrompeaks
9 months ago abrsoule ▴ 30
0
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0
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293
views
BiocParallel errors with xcms
BiocParallel xcms
10 months ago Yuki ▴ 10
1
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3
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327
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Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 14 months ago by ★ 1.9k • written 14 months ago by ▴ 10
1
vote
3
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396
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xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 8 weeks ago by ★ 1.9k • written 14 months ago by ▴ 30
0
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1
reply
279
views
convert from profile to centroid.
MassSpectrometry xcms
updated 15 months ago by 1.5k • written 15 months ago by • 0
0
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3
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322
views
Use xcms but mzR occurs error
software error xcms
updated 17 months ago by 3.4k • written 17 months ago by • 0
0
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4
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553
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 17 months ago by 1.5k • written 17 months ago by • 0
3
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2
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271
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 19 months ago by ★ 1.9k • written 19 months ago by ▴ 20
1
vote
2
replies
283
views
Baseline correction for GC-MS data
XCMS metaMS
updated 19 months ago by ▴ 20 • written 19 months ago by ▴ 20
0
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3
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357
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 21 months ago by ★ 1.9k • written 21 months ago by • 0
2
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13
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823
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
2.4 years ago abrsoule ▴ 30
0
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5
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497
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 2.4 years ago by 1.5k • written 2.4 years ago by • 0
2
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6
replies
676
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 2.5 years ago by ★ 1.9k • written 2.5 years ago by ▴ 10
0
votes
1
reply
638
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
2.5 years ago garfield320 ▴ 30
2
votes
1
reply
469
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
2.8 years ago abrsoule ▴ 30
0
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4
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1.4k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
2.8 years ago lmg • 0
0
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0
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437
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
2.9 years ago Johannes Rainer ★ 1.9k
0
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0
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762
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 3.1 years ago by • 0 • written 3.2 years ago by ★ 1.9k
0
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4
replies
682
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
3.4 years ago cpataki • 0
0
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9
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1.5k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
3.4 years ago goh • 0
3
votes
1
reply
475
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 3.4 years ago by 1.5k • written 3.4 years ago by • 0
0
votes
1
reply
681
views
XCMS for GC-MS
xcms GC-MS
3.5 years ago Joe • 0
0
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4
replies
737
views
Chromatographic peak detection failed for all files
xcms
3.6 years ago yuchiu • 0
0
votes
1
reply
645
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 3.8 years ago by ★ 1.9k • written 3.8 years ago by • 0
2
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4
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627
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
3.9 years ago james.dalgleish ▴ 30
1
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2
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1.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 4.2 years ago by ★ 1.9k • written 4.2 years ago by ▴ 30
1
vote
5
replies
1.8k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
4.3 years ago bhgyu ▴ 30
5
votes
7
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1.2k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by ▴ 30
2
votes
1
reply
1.6k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 4.6 years ago by • 0 • written 6.0 years ago by ▴ 20
0
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2
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608
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 4.6 years ago by 1.5k • written 4.6 years ago by • 0
0
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0
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528
views
xcmsFragments extract product fragment
xcms xcms2
4.6 years ago riccardo.romoli • 0
0
votes
1
reply
962
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 4.8 years ago by 44k • written 4.8 years ago by • 0
1
vote
1
reply
712
views
xcms warning message
R xcms warning message
updated 5.1 years ago by ★ 1.9k • written 5.1 years ago by • 0
0
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1
reply
788
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
5.1 years ago buescher • 0
1
vote
7
replies
1.4k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 5.1 years ago by ★ 1.9k • written 5.1 years ago by • 0
0
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1
reply
680
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by • 0
0
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1
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794
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 5.3 years ago by 58k • written 5.3 years ago by • 0
0
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1
reply
941
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by • 0
0
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6
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1.6k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
5.8 years ago dfrtyu • 0
0
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4
replies
1.6k
views
Segfault error when loading xcms and mzR packages
software error mzr xcms
5.9 years ago pmartin • 0
0
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0
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780
views
fillPeaks not calculating "intb" values.
xcms metabolomics
5.9 years ago Johannes Rainer ★ 1.9k
1
vote
3
replies
1.8k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
6.0 years ago Titan • 0
0
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3
replies
1.3k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
6.0 years ago Titan • 0
0
votes
4
replies
1.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
6.1 years ago Titan • 0
0
votes
4
replies
1.9k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
6.1 years ago Titan • 0
0
votes
3
replies
2.7k
views
how to import a CDF file in R ?
xcms metaMS MSeasy r
updated 6.3 years ago by • 0 • written 6.3 years ago by ▴ 80
50 results • Page 1 of 1
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Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
Comment: Unable to install Rhtslib in R-4.1.1 by cf2209 • 0
Thank you for your input I appreciate it. I will revise and make changes to this post as you suggested. Unfortunately I am not able to do t…
Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by Rory Stark ★ 4.3k
I'm copying this over now, but have a couple of questions: 1. Did you create a `ScanBamParam`object, set `isUnmappedQuery`, and store it …
Votes
Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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