Showing : arrayQualityMetrics • reset
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Problem with ArrayQualityMetrics PCA plot
arrayQualityMetrics
updated 3.7 years ago by ★ 13k • written 3.8 years ago by • 0
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Error arrayQualityMetrics
arrayQualityMetrics
updated 3.9 years ago by ★ 6.6k • written 3.9 years ago by • 0
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1.1k
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Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
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820
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Use arrayQualityMetrics package normalized cel file the number of samples has been reduced
normalization arrayQualityMetrics
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
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Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
9.2 years ago • updated 6.1 years ago Lluís Revilla Sancho ▴ 760
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arrayQualityMetrics with count table of RNA-Seq data - how to make ExpressionSetobject or ExpressionSetIllumina object?
arrayQualityMetrics RNA-Seq ExpressionSetobject ExpressionSetIllumina
6.2 years ago Mabeyer • 0
4
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1.5k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 10
2
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1
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1.7k
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arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 7.7 years ago by ★ 6.6k • written 7.7 years ago by ▴ 30
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 7.9 years ago by ★ 6.6k • written 7.9 years ago by • 0
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Quality control for Affymetrix GeneChip Mouse Gene 2.0 ST Array
qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
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1.4k
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Bug in cleanUpPhenoData
arrayQualityMetrics
updated 8.8 years ago by ★ 13k • written 8.8 years ago by • 0
10
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10
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4.5k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 8.8 years ago by ▴ 10 • written 9.5 years ago by ▴ 10
2
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0
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1.4k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
8.9 years ago Bouzid.a ▴ 20
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1.4k
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array Quality Metrics
arrayqualitymetrics
updated 9.0 years ago by ★ 13k • written 9.0 years ago by ▴ 20
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5
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1.6k
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quality control analysis
arrayqualitymetrics
updated 9.0 years ago by 68k • written 9.0 years ago by ▴ 20
6
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11
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4.4k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 9.2 years ago by ▴ 40 • written 10.7 years ago by ▴ 200
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1.5k
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argument "intgroup" is missing in arrayQualityMetrics
arrayQualityMetrics
9.4 years ago 13117882295 • 0
1
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2
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2.9k
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
2
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4
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2.7k
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arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 30
1
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1.6k
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arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ▴ 10
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2.0k
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Unable to execute java by using the Rscript
arrayqualitymetrics java r
10.2 years ago aaryan • 0
4
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4.9k
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arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
10.6 years ago rachelwright8 ▴ 10
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3
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1.8k
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arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
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1.4k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
11.3 years ago Wolfgang Huber ★ 13k
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4
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1.7k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 11.5 years ago by ▴ 750 • written 11.5 years ago by ▴ 300
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1
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1.8k
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Problem with NChannelSet objects using Agilent Data with arrayQualityMetrics package
arrayQualityMetrics ArrayExpress arrayQualityMetrics ArrayExpress
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 20
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4
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2.7k
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in-group missing arrayQualityMetrics()
arrayQualityMetrics arrayQualityMetrics
updated 11.6 years ago by ★ 13k • written 11.6 years ago by ★ 13k
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1.2k
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
11.6 years ago Agnes Paquet ▴ 30
3
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arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 11.8 years ago by 68k • written 11.8 years ago by ▴ 50
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2.0k
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arrayQualityMetrics - undefined columns selected
Microarray arrayQualityMetrics Microarray arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 50
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3
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1.8k
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arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 11.9 years ago by ▴ 10 • written 11.9 years ago by ★ 13k
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1.1k
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arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 11.9 years ago by ★ 13k • written 12.0 years ago by ★ 13k
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1.5k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
12.0 years ago cstrato ★ 3.9k
0
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3
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1.7k
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XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ▴ 40
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3
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1.3k
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need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 12.7 years ago by ★ 13k • written 12.7 years ago by ▴ 20
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2.1k
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arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 480
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1.7k
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arrayQualityMetrics run as batch-job: unable to start device PNG
arrayQualityMetrics arrayQualityMetrics
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 20
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2.8k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 290
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1.2k
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missing figure text in arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 90
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4
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1.7k
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Printing arrayQualityMetrics report
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 280
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2
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1.8k
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reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
13.2 years ago Alogmail2@aol.com ▴ 90
0
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1
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1.7k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by 52k
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1.3k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
13.3 years ago Daniel Aaen Hansen ▴ 90
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1.3k
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arrayQualityMetrics error with MAList
Normalization convert arrayQualityMetrics Normalization convert arrayQualityMetrics
13.4 years ago Wolfgang Huber ★ 13k
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1.3k
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DESeq countDataSets and arrayQualityMetrics (was: Re: DESeq estimateDispersion options for lower depth miRNA-seq)
Genetics Biobase arrayQualityMetrics DESeq Genetics Biobase arrayQualityMetrics DESeq
13.4 years ago Wolfgang Huber ★ 13k
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1.3k
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DESeq estimateDispersion options for lower depth miRNA-seq
Genetics arrayQualityMetrics DESeq Genetics arrayQualityMetrics DESeq
updated 13.4 years ago by ★ 13k • written 13.4 years ago by ▴ 50
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8
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2.2k
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Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
13.5 years ago Rosalind Cutts ▴ 20
0
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1
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1.4k
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for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ★ 4.3k
1
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2
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2.9k
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arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
13.5 years ago Guest User ★ 13k
0
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6
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1.8k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 10
101 results • Page 1 of 3
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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Not sure I understand. You ask how to do something and then show how one would do so.
Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10
Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200
I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …
Votes
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
Can NanoString data be analyzed using DESeq2?
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