Showing : atacseqqc • reset
1
vote
1
reply
633
views
Error with BSgenome, wanting to analyse non-model species with ATACseqQC
ATACseqQC
updated 22 months ago by 68k • written 22 months ago by • 0
0
votes
0
replies
646
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
22 months ago danalvoronov ▴ 10
0
votes
7
replies
1.8k
views
ATACseqQC shiftGAlignmentsList() problem
ATACseqQC ATACSeq
updated 22 months ago by ▴ 10 • written 2.1 years ago by • 0
0
votes
1
reply
1.1k
views
Error in ATACseqQC bamQC analysis
ATACSeq ATACseqQC
updated 3.0 years ago by ★ 1.3k • written 3.0 years ago by • 0
0
votes
0
replies
999
views
[ATACseqQC] NA values in sigs makes heatmap not completed
ATACseqQC ATACSeq
3.8 years ago hyjforesight • 0
1
vote
7
replies
2.2k
views
TSSEscore function in ATACseqQC package
ATACseqQC
3.9 years ago Liu Yu-Yu • 0
0
votes
3
replies
1.8k
views
package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 3.4 years ago by ★ 5.2k • written 4.2 years ago by ▴ 40
0
votes
0
replies
745
views
ATACseqQC function fragSizeDist returns error
fragSizeDist ATACseqQC
4.3 years ago xuyao15927402897 • 0
0
votes
0
replies
841
views
NAs in TSSE for certain windows
ATACseqQC
4.4 years ago • updated 4.3 years ago red_bricks ▴ 60
0
votes
2
replies
2.3k
views
*** caught segfault *** address 0xffffffff9a378e20, cause 'memory not mapped'
ATACseqQC
4.6 years ago Nolan • 0
0
votes
9
replies
5.7k
views
No peak corresponding to the nucleosome-free regions is observed in Fragment size distribution of ATAC-seq
ATACseqQC Fragmentsizedistribution ATAC-seq
4.7 years ago Xiaojie Cheng • 0
1
vote
4
replies
1.7k
views
How to use a fimo BED output as GRanges object in factorFootprints from ATACseqQC
ATACseqQC
updated 5.3 years ago by ★ 4.3k • written 5.3 years ago by ▴ 10
0
votes
4
replies
3.0k
views
ATACseqQC R package for QC scores (TSS, FRIP, NFR, IDR)
ATACseqQC atacseq R
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
1
vote
2
replies
14k
views
Interpreting TSS Enrichment Score Summary
atacseq atacseqqc tss enrichment
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
1
vote
4
replies
1.5k
views
Subsampling when adjusting the read start sites in the ATACseqQC guide
atacseqqc r
5.4 years ago Arpi Beshlikyan • 0
0
votes
5
replies
2.3k
views
ATACSeqQC - error when splitting files using mm10
atacseqqc atac-seq R bioconductor rsamtools
updated 5.6 years ago by ★ 4.0k • written 5.6 years ago by • 0
0
votes
5
replies
2.5k
views
ATACseqQC installation fails at shiny step
ATACseqQC
updated 6.3 years ago by 68k • written 6.3 years ago by • 0
0
votes
2
replies
1.4k
views
factorFootprints, bindingSites and Profile.segmentation
ATACSeqQC factorFootprints
updated 6.4 years ago by ★ 4.3k • written 6.4 years ago by • 0
1
vote
2
replies
2.0k
views
ATACseqQC function bamSplit returns error when input .bam is from mouse
ATACseqQC
6.4 years ago beiting ▴ 30
1
vote
11
replies
3.5k
views
ATAC-QC shiftGAlignmentsList function
ATAC-seq ATACseqQC
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
0
votes
7
replies
2.4k
views
ATACseqQC splitGAlignmentsByCut: strand values must be in '+' '-' '*'
ATACseqQC R
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
0
votes
1
reply
1.5k
views
ATAC-QC fragSizeDist function
ATAC-seq ATACseqQC
updated 6.5 years ago by ★ 4.3k • written 6.5 years ago by • 0
0
votes
7
replies
2.6k
views
ATACseqQC shiftGAlignmentsList leads to (all(elementNROWS)>3) is not TRUE error
ATACseqQC ATAC ATACseq software error Tutorial
updated 6.5 years ago by ★ 13k • written 6.5 years ago by • 0
0
votes
6
replies
2.8k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 6.6 years ago by • 0 • written 6.7 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Enough cell number or not based on library complexity evaluation by ATACseqQC?
ATACseqQC ATAC-Seq Library complexity estimateLibComplexity
6.8 years ago Gary ▴ 20
2
votes
5
replies
2.1k
views
The meaning of results produced by the bamQC function implemented in the ATACseqQC
ATACseqQC bamQC ATAC-Seq totalQNAMEs MAPQ
updated 6.9 years ago by ★ 4.3k • written 6.9 years ago by ▴ 20
11
votes
21
replies
7.2k
views
How about our ATAC-Seq data quality analyzed by ATACseqQC
ATACseqQC ATAC-Seq quality analysis fragment size distribution library complexity
updated 6.9 years ago by ★ 4.3k • written 6.9 years ago by ▴ 20
0
votes
3
replies
1.5k
views
Compare the DNA footprinting between different samples when using ATACseqQC
atacseqqc
updated 7.4 years ago by ★ 1.3k • written 7.5 years ago by ▴ 10
0
votes
9
replies
2.3k
views
use factorFootprints function in ATACseqQC to get DNA footprinting for certain gene region
ATACseqQC
updated 7.5 years ago by ★ 4.3k • written 7.5 years ago by ▴ 10
0
votes
1
reply
1.4k
views
ATACseqQC: a few questions
ATACseqQC
updated 7.5 years ago by ★ 4.3k • written 7.5 years ago by • 0
0
votes
1
reply
1.3k
views
ATACseqQC questions in R language
atacseqqc
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
0
votes
1
reply
2.3k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
0
votes
7
replies
3.1k
views
ATACseqQC memory overflow issue
atac-seq software error atacseqqc
updated 7.9 years ago by • 0 • written 7.9 years ago by ▴ 10
0
votes
2
replies
1.5k
views
ATACseqQC needs too much memory
ATACseqQC
updated 8.1 years ago by ★ 4.3k • written 8.1 years ago by • 0
5
votes
9
replies
5.2k
views
mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by ▴ 10
35 results • Page 1 of 1
Recent ...
Replies
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
Barcelona, Spain, 33 minutes ago
United States, 1 hour ago
United States, 1 hour ago
United States, 1 hour ago
The Netherlands, 2 hours ago
Traffic: 2332 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6