Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
crisprseek
•
reset
0
votes
1
reply
566
views
extendedSequences length is not the required for DeepCpf1 (34bp)
CRISPRseek
22 months ago
Miguel
• 0
0
votes
5
replies
3.0k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
2.4 years ago • updated 2.3 years ago
Miguel
• 0
1
vote
2
replies
895
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
2.4 years ago
nderian
▴ 10
0
votes
2
replies
779
views
CRISPRseek package: findgRNAs error
CRISPRseek
2.5 years ago
nderian
▴ 10
0
votes
2
replies
759
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.1 years ago
nderian
▴ 10
2
votes
7
replies
2.7k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
3.4 years ago • updated 3.3 years ago
xenon
▴ 40
4
votes
3
replies
864
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 3.0 years ago by
Daniel
• 0 • written 3.5 years ago by
xenon
▴ 40
1
vote
1
reply
670
views
Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
xenon
▴ 40
4
votes
1
reply
771
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
xenon
▴ 40
0
votes
1
reply
628
views
CRISPRseek base editor
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
s.islambey
• 0
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
Dawid G. Nowak
▴ 40
3
votes
10
replies
1.4k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
nils.hassel
• 0
0
votes
2
replies
744
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 4.0 years ago by
Julie Zhu
★ 4.3k • written 4.0 years ago by
giti_gazisoltani
• 0
0
votes
5
replies
1.1k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
Lucka387
• 0
0
votes
1
reply
805
views
CRISPRseek - adding CRISPRscan score
CRISPRseek
updated 4.5 years ago by
Julie Zhu
★ 4.3k • written 4.5 years ago by
ptgriffin
• 0
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
4.5 years ago
nils.hassel
• 0
0
votes
4
replies
1.0k
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 4.9 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
saba.parvez
• 0
1
vote
1
reply
751
views
CRISPRSeek module output - summary file: topN.offtargettotalscore
CRISPRSeek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Nan
• 0
5
votes
11
replies
1.4k
views
CRISPRseek Unusual Error
crisprseek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Dawid G. Nowak
▴ 40
0
votes
2
replies
1.3k
views
Problem installing CRISPRseek
crisprseek
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
ldumas9
• 0
0
votes
1
reply
909
views
CRISPRseek: offTargetAnalysis -> buildFeatureVectorForScoring increase max.mismatch error
crisprseek
offtargetanalysis
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
jacob.bradford
• 0
1
vote
2
replies
900
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
prokaryote23
• 0
1
vote
2
replies
962
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Ou, Jianhong
★ 1.3k
4
votes
12
replies
1.7k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Dawid G. Nowak
▴ 40
0
votes
5
replies
1.4k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
6.3 years ago
joyce
• 0
0
votes
0
replies
1.5k
views
replacement has X rows, data has Y rows
crisprseek
6.3 years ago
robert_w_link
• 0
0
votes
1
reply
998
views
CRISPRseek offTargetAnalysis error
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
1
reply
1.2k
views
CRISPRseek gRNA efficacy
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
2
replies
953
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
yhuang2
• 0
0
votes
6
replies
1.7k
views
CRISPRseek CFD score
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
1
reply
1.3k
views
could not find function "hash"
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
1
reply
947
views
CFD scores for searchHits?
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
0
replies
826
views
Interpretation of Score vs gRNA efficacy
crisprseek
6.6 years ago
robert_w_link
• 0
0
votes
0
replies
1.1k
views
Off Target region
offtarget analysis
crisprseek
6.7 years ago
susobhanbaidya
• 0
0
votes
1
reply
1.4k
views
Compareequence function is not running
software error
compilation error
CRISPRseek
updated 6.7 years ago by
daniel.vantwisk
▴ 50 • written 6.7 years ago by
susobhanbaidya
• 0
2
votes
3
replies
1.7k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
robert_w_link
• 0
0
votes
2
replies
1.2k
views
"NNG[A|G][A|G]N$" in CRISPRseek code
crisprseek
SaCas9
PAM
6.8 years ago • updated 6.7 years ago
bhanson1806
• 0
0
votes
1
reply
1.1k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek
graph
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 6.8 years ago by
liuyue235
• 0
0
votes
3
replies
1.2k
views
CRISPRseek with Doench 2016 scores
crisprseek
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 6.8 years ago by
pavitrarc
▴ 20
0
votes
1
reply
935
views
tilling sgRNA library design
bioconductor
crisprseek
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
renxj2008
• 0
0
votes
6
replies
1.5k
views
CRISPRseed gRNA.pattern is not producing expected result
crisprseek
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
prp291
• 0
1
vote
8
replies
1.7k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
millepattes.intersites
• 0
0
votes
5
replies
1.4k
views
CRISPRseek prediction of truncated Nme sgRNA and getting error message
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
Daniel
• 0
5
votes
24
replies
3.4k
views
CRISPRseek scoring clarification
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
elspeth.ransom
• 0
0
votes
38
replies
3.5k
views
running off target analaysis
crisprseek
7.2 years ago
Yap-JM
• 0
0
votes
2
replies
995
views
CRISPRseek offTargetAnalysis score
bioconductor
crisprseek
offtarget analysis
7.5 years ago
Marie
• 0
0
votes
3
replies
1.2k
views
CRISPRseek Ouput File Name
CRISPRseek
OutputFileName
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
bhanson1806
• 0
0
votes
1
reply
1.1k
views
Help with CRISPRseek inputFilePath
CRISPRseek
input files
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
bhanson1806
• 0
3
votes
2
replies
1.2k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rajewski23
• 0
0
votes
0
replies
686
views
Can i use protein point mutation text mining as bioinformatic tool
bioconductor
crisprseek
8.0 years ago
krababah
• 0
50 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Locations
• All
EMBL Heidelberg,
just now
United States,
1 minute ago
United States,
12 minutes ago
United States,
14 minutes ago
France,
15 minutes ago
Traffic: 705 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6