Showing : diffBind • reset
2
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8
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3.0k
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DiffBind -- Error: No sites have activity greater than minMaxval
DiffBind
updated 3.3 years ago by • 0 • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq SICER2 DiffBind MACS2 offtopic
updated 4.6 years ago by 68k • written 4.6 years ago by ▴ 290
2
votes
5
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5.8k
views
News: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq
updated 3.1 years ago by • 0 • written 4.6 years ago by ★ 5.2k
2
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5
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1.6k
views
erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM: number of items to replace is not a multiple of replacement length
DiffBind
4.7 years ago ben.vanderveer • 0
1
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4
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2.8k
views
DiffBind not accessible files in Example data
diffbind
updated 4.7 years ago by ★ 5.2k • written 8.1 years ago by • 0
0
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4
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2.1k
views
DiffBind
ATACSeq DiFFBind
4.7 years ago Riba Michela ▴ 90
0
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0
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703
views
DiffBind reporting error
DiffBind
4.7 years ago Ivan • 0
1
vote
2
replies
3.1k
views
diffBind report Fold scale
diffBind Fold Change
updated 4.7 years ago by • 0 • written 7.0 years ago by • 0
3
votes
1
reply
2.1k
views
How to retrieve peak summit from DiffBind peaks
DiffBind
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
1
vote
4
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4.0k
views
CUT&Tag differential peak analysis using Diffbind, with pre-calculated normalization factor.
DiffBind
updated 11 months ago by • 0 • written 4.8 years ago by • 0
2
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3
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1.7k
views
DiffBind does not use DESeq2 MLE estimation of fold change
DiffBind
updated 2.5 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
2
votes
2
replies
1.6k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
0
votes
7
replies
1.9k
views
DiffBind DEseq
DiffBind
4.8 years ago 浩然 • 0
0
votes
0
replies
2.2k
views
Blacklist error at dba.analyze(dbObj)
DiffBind ChIPSeq
4.8 years ago Goku • 0
2
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6
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2.2k
views
Error with dba.count(dbObj) in DiffBind
DiffBind ChIPSeq
4.8 years ago Goku • 0
4
votes
7
replies
5.0k
views
DiffBind how to retrieve normalized count matrix of ATAC-seq data
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
1
vote
1
reply
1.7k
views
diffbind installation through Conda fails
DiffBind conda
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by ▴ 90
1
vote
5
replies
2.6k
views
How to add chr to an dba object before differential analysis to enable removing blacklisted regions
DiffBind ATACSeq
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
4
replies
1.5k
views
How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
1
vote
3
replies
1.2k
views
DiffBind: bGain or bLoss parameters in dba.report don't work?
DiffBind
4.8 years ago fleur_p90 • 0
1
vote
4
replies
3.1k
views
DiffBind: dba.contrast for interaction terms
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by • 0
0
votes
1
reply
2.2k
views
DiffBind with spike in
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by • 0
1
vote
4
replies
1.5k
views
Diffbind error while running example data
DiffBind
written 4.9 years ago by • 0
1
vote
1
reply
1.3k
views
DiffBind fragmentSize meaning
DiffBind
updated 4.9 years ago by ★ 5.2k • written 4.9 years ago by • 0
2
votes
4
replies
2.3k
views
DiffBind analysis for ATAC-Seq error Error processing one or more read files
ATACSeq DiffBind
updated 4.9 years ago by ★ 5.2k • written 4.9 years ago by • 0
1
vote
1
reply
1.1k
views
Diffbind principal components
PCA DiffBind
updated 4.9 years ago by ★ 5.2k • written 4.9 years ago by • 0
1
vote
4
replies
2.2k
views
DiffBind analysis on ChIP-Seq qata and design matrix
ChIPSeq DiffBind ExperimentalDesign
4.9 years ago SFn • 0
1
vote
14
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3.4k
views
error: DBA object is already formed from a consensus peakset
DiffBind
4.9 years ago ahua217 ▴ 10
2
votes
2
replies
4.3k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 4.9 years ago by 25k • written 5.0 years ago by • 0
1
vote
1
reply
850
views
dba.count() of DiffBind 3.0 does not have bSubControl parameter
DiffBind
updated 5.0 years ago by ★ 5.2k • written 5.0 years ago by • 0
1
vote
2
replies
1.1k
views
How to make BiocParallel work in DiffBind when working under windows system
DiffBind
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 40
1
vote
7
replies
2.0k
views
Conc_1 in differnet dba.report result is slightly different
DiffBind
updated 5.0 years ago by ★ 5.2k • written 5.0 years ago by ▴ 40
1
vote
8
replies
2.0k
views
The compare result is different in score and Conc in DiffBind
DiffBind
5.0 years ago • updated 4.9 years ago Guandong Shang ▴ 40
1
vote
4
replies
1.2k
views
DiffBind dba.count error
DiffBind
5.0 years ago mdidish ▴ 10
1
vote
2
replies
2.0k
views
How does DiffBind deal with single-end and paired-end data together
DiffBind ssss
5.0 years ago Xiaojie Cheng • 0
0
votes
6
replies
3.8k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits
updated 5.0 years ago by ★ 5.2k • written 8.1 years ago by • 0
0
votes
3
replies
1.9k
views
Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
DESeq2 DiffBind
updated 4.6 years ago by ★ 5.2k • written 5.0 years ago by ▴ 10
1
vote
8
replies
3.6k
views
DiffBind 'mc.cores' > 1 is not supported on Windows
DiffBind
5.0 years ago GM ▴ 10
6
votes
6
replies
8.5k
views
Checking/updating package versions
DiffBind
5.0 years ago bertb • 0
1
vote
1
reply
2.1k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel DiffBind parallel
updated 5.0 years ago by ★ 5.2k • written 5.0 years ago by • 0
8
votes
20
replies
6.9k
views
Using DiffBind blacklists and greylists with results mapped to BDGP6
DiffBind
updated 4.0 years ago by ★ 5.2k • written 5.0 years ago by ▴ 10
0
votes
4
replies
3.9k
views
Bam files causing Blacklist errors in dba.analyze() but not in dba.blacklist()
DiffBind
5.0 years ago ahua217 ▴ 10
6
votes
8
replies
3.7k
views
Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions
updated 5.0 years ago by • 0 • written 8.2 years ago by ▴ 60
5
votes
10
replies
3.0k
views
Learning DiffBind - some basic questions
DiffBind
updated 4.8 years ago by ★ 5.2k • written 5.1 years ago by ▴ 10
2
votes
1
reply
1.3k
views
Bewildering PCA plot at DiffBind
DiffBind
updated 5.1 years ago by ★ 5.2k • written 5.1 years ago by ▴ 10
3
votes
4
replies
3.4k
views
Cut&Run normalization for Diffbind and DESeq2
GenomicLocalization DESeq2 Cut&Run Diffbind Normalization
5.1 years ago Monica ▴ 20
0
votes
2
replies
1.7k
views
DiffBind Error When using dba.count()
ChIP-Rx DiffBind chipseq
5.1 years ago indi97 • 0
0
votes
3
replies
1.1k
views
Venn diagram of peaks between three tissue types using DiffBind
DiffBind
updated 5.1 years ago by ★ 5.2k • written 5.1 years ago by • 0
4
votes
7
replies
4.6k
views
Normalization in DiffBind for Atac-seq
DiffBind
5.1 years ago Debayan ▴ 20
1
vote
9
replies
3.1k
views
DiffBind is losing peaks
DiffBind
5.2 years ago • updated 5.1 years ago Sebastian • 0
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