Showing : diffBind • reset
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DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq SICER2 DiffBind MACS2 offtopic
updated 4.3 years ago by 68k • written 4.3 years ago by ▴ 290
2
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5
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5.5k
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News: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr ATACSeq DiffBind ComplexHeatmap ChIPSeq
updated 2.8 years ago by • 0 • written 4.3 years ago by ★ 5.2k
2
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5
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1.4k
views
erorr in normalization with DiffBind: pv$binding[, colnum] <- pv$peaks[[i]]$RPKM: number of items to replace is not a multiple of replacement length
DiffBind
4.4 years ago • updated 4.3 years ago ben.vanderveer • 0
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4
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2.7k
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DiffBind not accessible files in Example data
diffbind
updated 4.4 years ago by ★ 5.2k • written 7.8 years ago by • 0
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4
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2.0k
views
DiffBind
ATACSeq DiFFBind
4.4 years ago • updated 4.3 years ago Riba Michela ▴ 90
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0
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661
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DiffBind reporting error
DiffBind
4.4 years ago Ivan • 0
1
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2
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3.0k
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diffBind report Fold scale
diffBind Fold Change
updated 4.4 years ago by • 0 • written 6.7 years ago by • 0
3
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1
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2.0k
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How to retrieve peak summit from DiffBind peaks
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by • 0
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4
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3.6k
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CUT&Tag differential peak analysis using Diffbind, with pre-calculated normalization factor.
DiffBind
updated 8 months ago by • 0 • written 4.5 years ago by • 0
2
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3
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1.6k
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DiffBind does not use DESeq2 MLE estimation of fold change
DiffBind
updated 2.2 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
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2
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1.6k
views
A mismatch between DiffBind's results and the same results retreieved as DESeq2 (from DiffBind)
DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
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7
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1.8k
views
DiffBind DEseq
DiffBind
4.5 years ago • updated 4.4 years ago 浩然 • 0
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0
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2.1k
views
Blacklist error at dba.analyze(dbObj)
DiffBind ChIPSeq
4.5 years ago Goku • 0
2
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6
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2.1k
views
Error with dba.count(dbObj) in DiffBind
DiffBind ChIPSeq
4.5 years ago Goku • 0
4
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7
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4.7k
views
DiffBind how to retrieve normalized count matrix of ATAC-seq data
DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
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1
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1.6k
views
diffbind installation through Conda fails
DiffBind conda
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 90
1
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5
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2.5k
views
How to add chr to an dba object before differential analysis to enable removing blacklisted regions
DiffBind ATACSeq
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
0
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4
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1.4k
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How sensitive is DiffBind to Deseq2 assumptions ?
DESeq2 DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by ▴ 10
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3
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1.1k
views
DiffBind: bGain or bLoss parameters in dba.report don't work?
DiffBind
4.5 years ago fleur_p90 • 0
1
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4
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3.0k
views
DiffBind: dba.contrast for interaction terms
DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by • 0
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2.0k
views
DiffBind with spike in
DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.5 years ago by • 0
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4
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1.4k
views
Diffbind error while running example data
DiffBind
written 4.6 years ago by • 0
1
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1
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1.2k
views
DiffBind fragmentSize meaning
DiffBind
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by • 0
2
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4
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2.2k
views
DiffBind analysis for ATAC-Seq error Error processing one or more read files
ATACSeq DiffBind
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by • 0
1
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1
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1.1k
views
Diffbind principal components
PCA DiffBind
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by • 0
1
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4
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2.0k
views
DiffBind analysis on ChIP-Seq qata and design matrix
ChIPSeq DiffBind ExperimentalDesign
4.6 years ago • updated 4.5 years ago SFn • 0
1
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14
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3.2k
views
error: DBA object is already formed from a consensus peakset
DiffBind
4.6 years ago ahua217 ▴ 10
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2
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4.1k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
1
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1
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779
views
dba.count() of DiffBind 3.0 does not have bSubControl parameter
DiffBind
updated 4.6 years ago by ★ 5.2k • written 4.6 years ago by • 0
1
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2
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1.0k
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How to make BiocParallel work in DiffBind when working under windows system
DiffBind
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 40
1
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7
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1.9k
views
Conc_1 in differnet dba.report result is slightly different
DiffBind
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 40
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8
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1.9k
views
The compare result is different in score and Conc in DiffBind
DiffBind
4.7 years ago • updated 4.6 years ago Guandong Shang ▴ 40
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4
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1.2k
views
DiffBind dba.count error
DiffBind
4.7 years ago mdidish ▴ 10
1
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2
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1.8k
views
How does DiffBind deal with single-end and paired-end data together
DiffBind ssss
4.7 years ago Xiaojie Cheng • 0
0
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6
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3.7k
views
DiffBind: Error in heights * sapply(called, function(x) x)
diffbind dba.count summits
updated 4.7 years ago by ★ 5.2k • written 7.8 years ago by • 0
0
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3
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1.8k
views
Does DiffBind correctly designate peaks with very small fold-change to be statistically significant?
DESeq2 DiffBind
updated 4.3 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
1
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8
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3.4k
views
DiffBind 'mc.cores' > 1 is not supported on Windows
DiffBind
4.7 years ago GM ▴ 10
6
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6
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8.0k
views
Checking/updating package versions
DiffBind
4.7 years ago bertb • 0
1
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1
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2.0k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel DiffBind parallel
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
8
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20
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6.5k
views
Using DiffBind blacklists and greylists with results mapped to BDGP6
DiffBind
updated 3.7 years ago by ★ 5.2k • written 4.7 years ago by ▴ 10
0
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4
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3.7k
views
Bam files causing Blacklist errors in dba.analyze() but not in dba.blacklist()
DiffBind
4.7 years ago ahua217 ▴ 10
6
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8
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3.5k
views
Interaction with DESeq2 via DiffBind
diffbind deseq2 interactions
updated 4.7 years ago by • 0 • written 7.9 years ago by ▴ 60
5
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10
replies
2.7k
views
Learning DiffBind - some basic questions
DiffBind
updated 4.5 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
2
votes
1
reply
1.2k
views
Bewildering PCA plot at DiffBind
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by ▴ 10
3
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4
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3.2k
views
Cut&Run normalization for Diffbind and DESeq2
GenomicLocalization DESeq2 Cut&Run Diffbind Normalization
4.8 years ago Monica ▴ 20
0
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2
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1.6k
views
DiffBind Error When using dba.count()
ChIP-Rx DiffBind chipseq
4.8 years ago indi97 • 0
0
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3
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980
views
Venn diagram of peaks between three tissue types using DiffBind
DiffBind
updated 4.8 years ago by ★ 5.2k • written 4.8 years ago by • 0
4
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7
replies
4.3k
views
Normalization in DiffBind for Atac-seq
DiffBind
4.8 years ago Debayan ▴ 20
1
vote
9
replies
2.9k
views
DiffBind is losing peaks
DiffBind
4.9 years ago • updated 4.8 years ago Sebastian • 0
0
votes
5
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1.3k
views
CHIP Seq Analysis by DiffBind Package
DiffBind ChIPchip
updated 4.7 years ago by ★ 5.2k • written 4.8 years ago by • 0
678 results • Page 5 of 14
Recent ...
Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexecutor4 • 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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