Bioconductor Dmr

Showing : dmr • reset

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1.4k

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DMR Methylation R Gviz

updated 5 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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527

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edgeR DMR

updated 15 months ago by Michael Love 41k • written 15 months ago by Fiona • 0

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1.8k

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dmr MethylationArrayData DMRcatedata

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by Julie • 0

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750

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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729

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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1.2k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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801

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ChAMP DMR

updated 3.9 years ago by Yuan Tian ▴ 280 • written 3.9 years ago by olive8306 • 0

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912

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bumphunter DMR methylation minfi

4.2 years ago i.s.brorson • 0

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853

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DMR bumphunter EPIC chip

4.2 years ago i.s.brorson • 0

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1.6k

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ChAMP DMR champ.DMR

5.6 years ago yuabrahamliu • 0

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709

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methylsig no replicates dmr

5.8 years ago nilaycan • 0

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1.4k

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bumphunter DMR doparallel multicore

updated 9 months ago by Alessandro • 0 • written 6.0 years ago by arce.domingo.1407 • 0

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1.5k

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dmrseq dmr dmrs bisulfite methylation

updated 6.2 years ago by keegan ▴ 60 • written 6.3 years ago by l.kremer • 0

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1.2k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Ellen O • 0

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1.5k

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dmrcate dmr analysis dmr

updated 7.3 years ago by Tim Peters ▴ 180 • written 7.3 years ago by alexandria.andrayas ▴ 10

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4.2k

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bumphunter DMR DMR analysis minfi bioconductor

updated 7.3 years ago by rafa ▴ 60 • written 7.3 years ago by chelsey.ju • 0

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3.6k

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bsseq dmr ttest pvalue

updated 8.2 years ago by James W. MacDonald 65k • written 8.2 years ago by enricoferrero ▴ 660

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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1.3k

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ChAMP minfi DMR dmr analysis lasso

8.6 years ago AST ▴ 60

20 results • Page 1 of 1

Recent ...

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Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k

See `?results`, in particular the lfcThreshold argument.

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…

Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Votes

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

stuck on unimplemented type 'list' in 'EncodeElement'

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