Bioconductor Filter

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239

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RNASeq filter design edgeR model.matrix

7 days ago • updated 6 days ago mohammedtoufiq91 ▴ 10

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1.5k

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filter deseq2

updated 2.7 years ago by Michael Love 43k • written 2.8 years ago by PD • 0

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1.9k

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R filter limma Normalization Microarray

2.8 years ago Abdul ▴ 20

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948

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filter gate_quad_tmix gt_gating

3.9 years ago • updated 3.7 years ago Pierre • 0

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1.2k

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flowCore openCyto Summary Result Filter

updated 5.7 years ago by Jake Wagner ▴ 310 • written 5.8 years ago by noviello • 0

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2.0k

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RNA WGCNA filter

6.6 years ago modarzi ▴ 10

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1.3k

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filter deseq2

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by charles.foster ▴ 180

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1.6k

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rtracklayer gff filter

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by alslonik • 0

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2.4k

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deseq2 filter genefilter

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Björn • 0

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4.7k

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loop filter

written 8.2 years ago by kritikamish99 ▴ 10

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4.3k

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DGElist filter edgeR

updated 8.5 years ago by Gordon Smyth 53k • written 8.6 years ago by alakatos ▴ 130

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1.7k

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limma filter genelist differential gene expression

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by bi_Scholar • 0

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1.3k

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missing data filter

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by rgescudero • 0

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1.8k

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flowcore gate subsetting filter

updated 10.4 years ago by Jiang, Mike ★ 1.3k • written 10.4 years ago by peterfoster ▴ 20

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3.3k

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probe filter subset gene symbol affy

10.9 years ago alakatos ▴ 130

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4.4k

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bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by svlachavas ▴ 840

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3.7k

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deseq filter reads

11.0 years ago ccheung • 0

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1.8k

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variantannotation vcf fixed filter

11.0 years ago Anna N. • 0

18 results • Page 1 of 1

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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0

Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…

Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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