Bioconductor Filter

Showing : filter • reset

votes

replies

201

views

RNASeq filter design edgeR model.matrix

4 days ago • updated 3 days ago mohammedtoufiq91 ▴ 10

votes

replies

1.5k

views

filter deseq2

updated 2.7 years ago by Michael Love 43k • written 2.7 years ago by PD • 0

vote

replies

1.8k

views

R filter limma Normalization Microarray

2.8 years ago Abdul ▴ 20

votes

942

views

filter gate_quad_tmix gt_gating

3.9 years ago • updated 3.7 years ago Pierre • 0

votes

1.2k

views

flowCore openCyto Summary Result Filter

updated 5.7 years ago by Jake Wagner ▴ 310 • written 5.8 years ago by noviello • 0

vote

2.0k

views

RNA WGCNA filter

6.5 years ago modarzi ▴ 10

vote

1.3k

views

filter deseq2

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by charles.foster ▴ 180

votes

1.6k

views

rtracklayer gff filter

updated 6.9 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by alslonik • 0

votes

2.4k

views

deseq2 filter genefilter

updated 8.2 years ago by Michael Love 43k • written 8.2 years ago by Björn • 0

vote

replies

4.7k

views

loop filter

written 8.2 years ago by kritikamish99 ▴ 10

votes

replies

4.2k

views

DGElist filter edgeR

updated 8.5 years ago by Gordon Smyth 53k • written 8.5 years ago by alakatos ▴ 130

votes

replies

1.7k

views

limma filter genelist differential gene expression

updated 9.3 years ago by Gordon Smyth 53k • written 9.3 years ago by bi_Scholar • 0

vote

1.3k

views

missing data filter

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by rgescudero • 0

votes

1.8k

views

flowcore gate subsetting filter

updated 10.3 years ago by Jiang, Mike ★ 1.3k • written 10.3 years ago by peterfoster ▴ 20

votes

replies

3.3k

views

probe filter subset gene symbol affy

10.9 years ago alakatos ▴ 130

votes

replies

4.4k

views

bioconductor mas5 perfectmatch affymetrixchip filter

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by svlachavas ▴ 840

votes

replies

3.7k

views

deseq filter reads

11.0 years ago ccheung • 0

votes

replies

1.7k

views

variantannotation vcf fixed filter

11.0 years ago Anna N. • 0

18 results • Page 1 of 1

Recent ...

Replies

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Votes

Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760