Showing : graph • reset
4
votes
1
reply
2.3k
views
Gene Ontology: filtering out most informative terms from a list of GO terms
GO graph GO graph
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 30
3
votes
3
replies
1.7k
views
Can't install graph package
graph
updated 4.1 years ago by 25k • written 4.1 years ago by ▴ 10
3
votes
2
replies
2.5k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 150
2
votes
0
replies
1.4k
views
Problem using Rgraphviz (edge weights going missing).
GO graph Rgraphviz GO graph Rgraphviz
15.6 years ago Dan Bolser ▴ 40
2
votes
4
replies
4.7k
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny graph RBGL
updated 13 months ago by ▴ 10 • written 3.2 years ago by • 0
2
votes
2
replies
2.3k
views
Best practices for converting adj matrix -> graphNEL
graph adjacency matrix
7.4 years ago bryon ▴ 10
2
votes
3
replies
3.4k
views
How to convert graphNEL object into Adjacency Matrix?
graph kegggraph xml
updated 7.1 years ago by ★ 3.3k • written 7.1 years ago by • 0
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 40
2
votes
2
replies
2.1k
views
GO offspring consistency
annotation GO graph gene ontology
updated 9.4 years ago by 1.6k • written 9.4 years ago by • 0
2
votes
1
reply
1.9k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 6.3 years ago by • 0 • written 10.6 years ago by ★ 1.6k
1
vote
1
reply
1.4k
views
Rgraphviz and margins
graph Rgraphviz graph Rgraphviz
updated 8.3 years ago by • 0 • written 12.9 years ago by ▴ 80
1
vote
4
replies
2.1k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
written 6.2 years ago by • 0
1
vote
2
replies
951
views
Library for Node Influence package
Graph gene regulatory network node influence gene ranking
updated 4.4 years ago by ★ 3.9k • written 4.4 years ago by ▴ 50
1
vote
1
reply
1.1k
views
Fastest way to get the distances between pairs of graph nodes
graph rgbl dag
updated 7.4 years ago by ★ 13k • written 7.5 years ago by ▴ 110
1
vote
0
replies
994
views
GO graphs made with topGO are unreadable
GO graph topGO GO graph topGO
11.3 years ago Guest User ★ 13k
1
vote
4
replies
3.6k
views
Rgraphviz fontsize
GO graph Rgraphviz GO graph Rgraphviz
updated 15.7 years ago by 6.7k • written 15.7 years ago by ▴ 80
1
vote
1
reply
4.7k
views
edgeR: pseudocounts, logConc and logFC
Proteomics graph edgeR Proteomics graph edgeR
updated 14.1 years ago by ★ 1.1k • written 14.1 years ago by ▴ 340
1
vote
1
reply
1.8k
views
topGO Fisher test error
GO graph GO graph
updated 11.1 years ago by ▴ 400 • written 11.1 years ago by ★ 13k
1
vote
1
reply
1.1k
views
How to get the list of the components of all containers from the active RedeR session?
reder graph
updated 6.6 years ago by ▴ 10 • written 6.6 years ago by ▴ 10
0
votes
1
reply
995
views
BrainArray custom CDF repository missing in biocReposList()
Microarray cdf probe graph Microarray cdf probe graph
updated 13.0 years ago by 65k • written 13.0 years ago by ▴ 100
0
votes
0
replies
1.2k
views
Bioconductor 2.4 is released
Microarray qPCR Metabolomics Annotation Normalization graph flowCore Microarray qPCR
15.1 years ago Patrick Aboyoun ★ 1.6k
0
votes
5
replies
1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.5 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
votes
1
reply
1.1k
views
Re: Memory management in Windows 2000
Normalization affy graph Normalization affy graph
updated 21.5 years ago by ▴ 360 • written 21.5 years ago by ▴ 250
0
votes
0
replies
1.4k
views
limma Time Course Experiments question
graph limma SANTA graph limma SANTA
15.1 years ago Marcelo Laia ▴ 450
0
votes
0
replies
768
views
XML specifs for R GUIs dialog boxes
graph graph
21.5 years ago Philippe Grosjean ▴ 10
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago • updated 21.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase Ruuid DynDoc tkWidgets affy graph Rgraphviz AnnBuilder RBGL PROcess Biobase
21.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
0
replies
1.2k
views
Bioconductor 1.2 Released
Microarray SAGE Normalization GO GUI Cancer cdf affy vsn graph AnnBuilder Microarray
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
0
votes
4
replies
1.3k
views
Compilation problem installing Bioconductor (RGraphviz)
graph Rgraphviz graph Rgraphviz
updated 20.9 years ago by ★ 5.5k • written 20.9 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
21.5 years ago Jeff Gentry ★ 3.9k
0
votes
0
replies
1.1k
views
How to use the same node layout for a set of graph plots using graph and Rgraphviz?
Cancer graph Rgraphviz Cancer graph Rgraphviz
16.3 years ago Rand, Hugh ▴ 50
0
votes
0
replies
1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest affy affydata graph limma gcrma
17.5 years ago Martin Morgan 25k
0
votes
1
reply
907
views
some experiences and some troubles with GraphAT package
GO graph PROcess GraphAT GO graph PROcess GraphAT
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 70
0
votes
0
replies
1.2k
views
Reminder: Release 1.2 on May 28th
Microarray SAGE Normalization GO GUI vsn graph AnnBuilder Microarray SAGE Normalization
21.0 years ago Jeff Gentry ★ 3.9k
0
votes
2
replies
1.2k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
4
replies
1.2k
views
Another question Re: question on hgu95 metadata and ontoTools
GO probe affy graph ontoTools PROcess GO probe affy graph ontoTools PROcess
20.3 years ago Elisabetta Manduchi ▴ 160
0
votes
0
replies
1.4k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.1 years ago gv ▴ 40
0
votes
1
reply
975
views
Re: limma plot error?
Normalization graph limma GeneTraffic Normalization graph limma GeneTraffic
20.4 years ago Gordon Smyth 50k
0
votes
1
reply
1.2k
views
RE: Bioconductor Digest, Vol 8, Issue 15
Microarray Clustering Cancer affy graph SAGElyzer Rgraphviz Rdbi RBGL Microarray Cancer
updated 20.6 years ago by ▴ 180 • written 20.6 years ago by ▴ 160
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.3 years ago • updated 20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.4k
views
Recent changes to Bioconductor packages
Microarray Ruuid graph limma EBarrays Microarray Ruuid graph limma EBarrays
20.2 years ago • updated 20.1 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.1k
views
Questions for Affy package on hist() and boxplot()
affy graph affy graph
19.3 years ago Luo, Wen ▴ 50
0
votes
1
reply
941
views
heatmap() customization
graph graph
updated 20.0 years ago by 21k • written 20.0 years ago by ▴ 300
0
votes
1
reply
877
views
SparseM not found
graph graph
updated 20.0 years ago by ★ 3.9k • written 20.0 years ago by ▴ 620
0
votes
2
replies
1.1k
views
where can I find the GO and xtable package?
GO Biobase annotate genefilter graph RBGL GOstats GO Biobase annotate genefilter graph
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 320
0
votes
0
replies
677
views
boundary() only gives the children of the subgraph; a possible DAG
graph graph
19.7 years ago Yi-Xiong Sean Zhou ▴ 50
0
votes
1
reply
964
views
Rgraphviz intall error
graph Rgraphviz graph Rgraphviz
updated 19.7 years ago by ▴ 20 • written 19.7 years ago by ▴ 30
0
votes
0
replies
1.6k
views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
10.3 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
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Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k
Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …
Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30
I think I am about to run into the same issue with my data, so I'll be interested to read peoples opinions on this also i.e. when the group…
Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups by Gordon Smyth 50k
The MDS plot shows that the time points are hugely different and whereas the replicate samples appear very consistent, with very low variat…
Answer: Store output of matchPWM() by mat149 ▴ 70
hitlist<-lapply(irs, FUN = matchPWM, min.score="90%", with.score=TRUE, pwm = pwm) ot <- endoapply(hitlist, function(x) as(x, "IRanges")) …
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
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Comment: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: Store output of matchPWM()
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
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