Showing : heatmaps • reset
4
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DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
2
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5
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3.2k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 15 months ago by 50k • written 16 months ago by ▴ 10
2
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5
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1.6k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
17 months ago Katharina • 0
2
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2
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629
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
15 months ago Sooni ▴ 10
2
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3
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994
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 15 months ago by ▴ 10
1
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1
reply
841
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 42k • written 3.2 years ago by ▴ 30
1
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1
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509
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 13 months ago by ▴ 80 • written 13 months ago by ▴ 10
1
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1
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778
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Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
1
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1
reply
990
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 22 months ago by 65k • written 22 months ago by • 0
0
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3
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1.2k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 20 months ago by 65k • written 20 months ago by • 0
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3.8k
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Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
0
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1
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633
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
0
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1
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2.1k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 42k • written 19 months ago by • 0
0
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0
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826
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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3
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583
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Installing Gpart
gpart heat heatmaps
updated 6 months ago by 65k • written 7 months ago by • 0
0
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2
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624
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Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 10 months ago by • 0
0
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0
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721
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
0
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1
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710
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 6 months ago by ▴ 780 • written 6 months ago by • 0
0
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1
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840
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edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by 50k • written 6 months ago by • 0
0
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1
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2.4k
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Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
0
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1
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1.1k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
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3
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1.3k
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Persisting error in making a heatmap
heatmaps gplots
22 months ago beslinail • 0
0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
0
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1
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635
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struggling to create a heatmap
DESeq2 heatmaps
updated 15 months ago by ★ 4.1k • written 15 months ago by ▴ 10
0
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1
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1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 20 months ago by • 0
0
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2
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888
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago shuangshuang • 0
26 results • Page 1 of 1
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Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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