Showing : heatmaps • reset
2
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5
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1.5k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
4
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5
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1.3k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
2
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5
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3.1k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 14 months ago by 50k • written 16 months ago by ▴ 10
0
votes
3
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1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 19 months ago by 65k • written 19 months ago by • 0
0
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3
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573
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Installing Gpart
gpart heat heatmaps
updated 6 months ago by 65k • written 6 months ago by • 0
2
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3
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964
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 15 months ago by ▴ 10
0
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3
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1.2k
views
Persisting error in making a heatmap
heatmaps gplots
22 months ago beslinail • 0
0
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2
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599
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Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 10 months ago by • 0
0
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2
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3.7k
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Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
2
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2
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611
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
15 months ago Sooni ▴ 10
0
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2
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1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
0
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2
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876
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago • updated 13 months ago shuangshuang • 0
0
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1
reply
651
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 5 months ago by ▴ 780 • written 6 months ago by • 0
0
votes
1
reply
815
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by 50k • written 6 months ago by • 0
1
vote
1
reply
829
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 30
0
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1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
1
vote
1
reply
768
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
0
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1
reply
1.0k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
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1
reply
623
views
struggling to create a heatmap
DESeq2 heatmaps
updated 14 months ago by ★ 4.0k • written 14 months ago by ▴ 10
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 20 months ago by • 0
0
votes
1
reply
617
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 13 months ago by ★ 4.0k • written 13 months ago by • 0
0
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1
reply
2.1k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 41k • written 18 months ago by • 0
1
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1
reply
503
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 12 months ago by ▴ 80 • written 13 months ago by ▴ 10
1
vote
1
reply
980
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 22 months ago by 65k • written 22 months ago by • 0
0
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0
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807
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
14 months ago gianni.drm • 0
0
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0
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719
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
26 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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