Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 4 months ago by ▴ 240 • written 7.1 years ago by ▴ 20
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3
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
5.6 years ago s.w.vanderlaan ▴ 30
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5
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2.1k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 5.7 years ago by ▴ 280 • written 5.7 years ago by ▴ 60
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1
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
6.5 years ago preethibagopi28 ▴ 10
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1
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
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0
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1.2k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
6.6 years ago david.ch • 0
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0
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.1 years ago rahel14350 ▴ 10
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1
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1.7k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.2 years ago by ▴ 60 • written 7.3 years ago by ▴ 120
0
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1
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999
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 7.3 years ago by 65k • written 7.3 years ago by • 0
0
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0
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909
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
7.4 years ago IOM ▴ 20
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0
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802
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
7.6 years ago arisarkar88 ▴ 40
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1.8k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
7.8 years ago Andreas Paul • 0
0
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2
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Common probes between 27K and 450 chip
illimina 450k methylation
7.8 years ago Adrian Johnson ▴ 330
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.1 years ago Adam • 0
0
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4
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1.6k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by ▴ 40
0
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2
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1.9k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
8.5 years ago Brian Smith ▴ 120
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13
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2.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
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2
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2.5k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
8.8 years ago metamaden ▴ 10
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3
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.1 years ago by ▴ 180 • written 9.1 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
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