Bioconductor P-value

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881

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outputresult DEqMS sca.adj.pval error p-value

2.9 years ago Bastian • 0

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1.4k

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by nash12 • 0

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5.3k

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gwas genesis p-value q-q-plot

updated 4.5 years ago by Anna • 0 • written 5.7 years ago by solanum • 0

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2.8k

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p-value FDR DEP

updated 4.2 years ago by António Miguel de Jesus Domingues ▴ 510 • written 4.7 years ago by Alexei Leliavski ▴ 60

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2.2k

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statistical significance p-value q-value FDR qvalue

5.6 years ago manozawa ▴ 10

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1.4k

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ihw p-value multiple hypothesis

updated 6.2 years ago by Wolfgang Huber ★ 13k • written 6.2 years ago by xiaotong.yao23 ▴ 10

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2.0k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by ilovesuperheroes1993 • 0

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2.3k

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deseq2 p-value continuous deseq

6.5 years ago ariel ▴ 20

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2.5k

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DESeq2 nbinomWaldTest one-sided p-value

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by t.kuilman ▴ 170

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1.3k

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weighted correlation network analysis WGCNA P-Value

7.0 years ago modarzi ▴ 10

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13k

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FDR p-value DESeq RNA-Seq

updated 7.7 years ago by Wade Davis ▴ 60 • written 8.3 years ago by yjiangnan ▴ 10

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1.2k

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Gostats p-value

8.1 years ago salamandra ▴ 20

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1.9k

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deseq2 normalization p-value metaseq

updated 8.1 years ago by Ryan C. Thompson ★ 7.9k • written 8.1 years ago by ed_isfahani • 0

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4.5k

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limma microarray fdr p-value results

updated 8.2 years ago by Aaron Lun ★ 29k • written 8.2 years ago by bhgyu ▴ 30

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2.6k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 9.2 years ago by Rory Stark ★ 5.2k • written 9.2 years ago by alisonhanh.nguyen • 0

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15k

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deseq differential gene expression statistics p-value

updated 4.5 years ago by Kai_Qi ▴ 20 • written 9.5 years ago by Giard ▴ 30

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5.4k

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p-value detection

updated 9.6 years ago by Gordon Smyth 52k • written 9.6 years ago by Eleni Christodoulou ▴ 150

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2.8k

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rankprod p-value

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by brilladine • 0

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2.6k

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p-value medips MACS

updated 10.2 years ago by Lukas Chavez ▴ 570 • written 10.2 years ago by tptacek3050 • 0

19 results • Page 1 of 1

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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k

No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0

Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.

Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by James W. MacDonald 68k

>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…

Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by Denise • 0

Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k

There is no biological replication here. This is not supported by DESeq2 (or mos credible statistical tools). You would need different dono…

Votes

Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations

Answer: Are voomByGroup and voomLmFit compatible?

Answer: p-adjusted values in multiple comparisons

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