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p-value
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0
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736
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DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
2.1 years ago
Bastian
• 0
0
votes
1
reply
1.2k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
nash12
• 0
1
vote
2
replies
4.7k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.8 years ago by
Anna
• 0 • written 5.0 years ago by
solanum
• 0
7
votes
2
replies
2.3k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 3.4 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 4.0 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
1.7k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
4.9 years ago
manozawa
▴ 10
1
vote
2
replies
1.1k
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 5.4 years ago by
Wolfgang Huber
★ 13k • written 5.4 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
1.5k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
1.9k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.8 years ago
ariel
▴ 20
2
votes
2
replies
2.2k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 6.2 years ago by
Michael Love
42k • written 6.2 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.2k
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
6.3 years ago
modarzi
▴ 10
41
votes
44
replies
12k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 6.9 years ago by
Wade Davis
▴ 60 • written 7.5 years ago by
yjiangnan
▴ 10
0
votes
0
replies
1.1k
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
7.4 years ago
salamandra
▴ 20
5
votes
6
replies
1.7k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 7.4 years ago by
Ryan C. Thompson
★ 7.9k • written 7.4 years ago by
ed_isfahani
• 0
2
votes
5
replies
3.7k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.3k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 8.4 years ago by
Rory Stark
★ 5.2k • written 8.4 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
14k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 3.7 years ago by
Kai_Qi
▴ 20 • written 8.8 years ago by
Giard
▴ 30
11
votes
20
replies
4.7k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 8.8 years ago by
Gordon Smyth
51k • written 8.8 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
2.5k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 9.4 years ago by
James W. MacDonald
67k • written 9.4 years ago by
brilladine
• 0
1
vote
2
replies
2.4k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 9.5 years ago by
Lukas Chavez
▴ 570 • written 9.5 years ago by
tptacek3050
• 0
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
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efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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