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News:
Online RNA-seq analysis course 26-29th Janury
EnhancedVolcano
GSEABase
pheatmap
Workshop
DESeq2
written 20 days ago by
Frances Turner
▴ 20
0
votes
3
replies
2.0k
views
Label specific rows in pheatmap
heatmaps
pheatmap
updated 15 months ago by
James W. MacDonald
68k • written 15 months ago by
Dina
▴ 50
0
votes
2
replies
1.4k
views
Cluster columns in Pheatmap
geneexp
pheatmap
heatmaps
cluster
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
pehove2385
• 0
0
votes
1
reply
761
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2
pheatmap
updated 23 months ago by
James W. MacDonald
68k • written 23 months ago by
zhangaimei
• 0
0
votes
2
replies
1.4k
views
Heat Map
ColData
pheatmap
DESeq2
written 2.6 years ago by
dania.khalid
• 0
0
votes
1
reply
4.3k
views
Annotation in pheatmap
pheatmap
updated 3.5 years ago by
Guido Hooiveld
★ 4.1k • written 3.6 years ago by
Rob
• 0
0
votes
2
replies
9.0k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
3.6 years ago
Bhavana
• 0
2
votes
4
replies
4.8k
views
Issues with Pheatmap
pheatmap
3.8 years ago
axe880
• 0
0
votes
4
replies
20k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R
pheatmap
xcms
updated 3.4 years ago by
James W. MacDonald
68k • written 4.5 years ago by
onokaisaac
• 0
1
vote
3
replies
15k
views
Sorting columns in pheatmap
pheatmap
updated 18 months ago by
HAK
• 0 • written 4.8 years ago by
Linda
• 0
0
votes
5
replies
8.0k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R
Pathways
pheatmap
limma
written 4.9 years ago by
Ridha
▴ 10
0
votes
1
reply
3.7k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
trichorico
▴ 10
0
votes
1
reply
1.8k
views
Plotting the most expressed genes after conducting DESeq2
DESeq2
pheatmap
apeglm
updated 5.0 years ago by
Michael Love
43k • written 5.0 years ago by
amoaristotle
▴ 10
0
votes
2
replies
11k
views
Add selected row names on pheatmap
R
pheatmap
updated 5.2 years ago by
ATpoint
★ 5.0k • written 5.2 years ago by
ecg1g15
▴ 30
0
votes
2
replies
6.9k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2
pheatmap
RColorBrewer
BiocGenerics
updated 5.7 years ago by
Michael Love
43k • written 5.7 years ago by
matthewzli777
• 0
2
votes
4
replies
13k
views
pheatmap for DEGs
normalization
pheatmap
updated 5.8 years ago by
Kevin Blighe
★ 4.0k • written 5.8 years ago by
Hamidreza Hashemi
▴ 20
5
votes
11
replies
4.5k
views
Heatmap only including DE genes?
heatmap
coolmap
pheatmap
updated 5.8 years ago by
Gordon Smyth
53k • written 5.8 years ago by
Raito92
▴ 60
0
votes
1
reply
6.6k
views
Reordering clusters when plotting pheatmap in R
R
pheatmap
clusters
6.6 years ago
ecg1g15
▴ 30
0
votes
4
replies
3.6k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
6.9 years ago
lmg
• 0
0
votes
6
replies
2.2k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2
pheatmap
updated 7.0 years ago by
Wolfgang Huber
★ 13k • written 7.0 years ago by
bdy8
▴ 10
0
votes
2
replies
2.1k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2
pheatmap
average
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
chighfi
• 0
2
votes
1
reply
2.7k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2
rld
pheatmap
dds
updated 8.2 years ago by
Michael Love
43k • written 10.4 years ago by
rahel14350
▴ 10
4
votes
8
replies
9.1k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2
heatmap.2
bicluster
pheatmap
updated 8.3 years ago by
Michael Love
43k • written 10.4 years ago by
tj.hu
▴ 10
0
votes
0
replies
3.8k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap
kmeans
8.3 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
1
reply
12k
views
Pheatmap clustering and row annotation
R
pheatmap
cutree
8.4 years ago
meseretbrihanu
▴ 10
0
votes
1
reply
2.6k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2
tpm
heatmap
pheatmap
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
jarod_v6@libero.it
▴ 40
0
votes
1
reply
3.7k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
8.7 years ago
vd4mmind
• 0
0
votes
1
reply
1.5k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 8.7 years ago by
Gavin Kelly
▴ 690 • written 8.7 years ago by
joseph
▴ 50
8
votes
1
reply
11k
views
extracting the genes associated with the clusters
heatmap.2
pheatmap
complexheatmap
heatplus
updated 8.9 years ago by
Gavin Kelly
▴ 690 • written 8.9 years ago by
Bogdan
▴ 670
0
votes
0
replies
7.3k
views
Pheatmap: how to use breaks for pheatmap
pheatmap
heatmap
9.3 years ago
jarod_v6@libero.it
▴ 40
1
vote
1
reply
6.6k
views
adding margins around pheatmap plots
pheatmap
updated 9.5 years ago by
Wolfgang Huber
★ 13k • written 9.5 years ago by
stephane.plaisance
▴ 10
1
vote
2
replies
3.3k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap
heatmap.2
9.9 years ago
John
▴ 30
0
votes
2
replies
2.2k
views
Unsupervised analysis problems
pheatmap
unsupervised
updated 10.0 years ago by
Michael Love
43k • written 10.0 years ago by
jarod_v6@libero.it
▴ 40
4
votes
5
replies
4.8k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2
pheatmap
10.0 years ago
jarod_v6@libero.it
▴ 40
4
votes
9
replies
9.8k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
10.1 years ago
Deepak Tanwar
▴ 10
1
vote
0
replies
3.1k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2
pheatmap
10.4 years ago
AJC
▴ 10
36 results • Page
1 of 1
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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