Showing : pheatmap • reset
0
votes
3
replies
544
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 3 months ago by 67k • written 3 months ago by ▴ 50
0
votes
2
replies
771
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
1
reply
502
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2 pheatmap
updated 11 months ago by 67k • written 11 months ago by • 0
0
votes
2
replies
889
views
Heat Map
ColData pheatmap DESeq2
written 19 months ago by • 0
0
votes
1
reply
3.2k
views
Annotation in pheatmap
pheatmap
updated 2.5 years ago by ★ 4.1k • written 2.6 years ago by • 0
0
votes
2
replies
6.0k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.6 years ago Bhavana • 0
2
votes
4
replies
2.8k
views
Issues with Pheatmap
pheatmap
2.8 years ago axe880 • 0
0
votes
4
replies
18k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.4 years ago by 67k • written 3.5 years ago by • 0
1
vote
3
replies
13k
views
Sorting columns in pheatmap
pheatmap
updated 6 months ago by • 0 • written 3.8 years ago by • 0
0
votes
4
replies
6.1k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by ▴ 10
0
votes
1
reply
3.0k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.9 years ago by ★ 4.0k • written 3.9 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Plotting the most expressed genes after conducting DESeq2
DESeq2 pheatmap apeglm
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 10
0
votes
2
replies
9.4k
views
Add selected row names on pheatmap
R pheatmap
updated 4.2 years ago by ★ 4.6k • written 4.2 years ago by ▴ 30
0
votes
2
replies
6.0k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
2
votes
4
replies
11k
views
pheatmap for DEGs
normalization pheatmap
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 20
5
votes
11
replies
3.6k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 60
0
votes
1
reply
5.6k
views
Reordering clusters when plotting pheatmap in R
R pheatmap clusters
5.6 years ago ecg1g15 ▴ 30
0
votes
4
replies
3.2k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.9 years ago lmg • 0
0
votes
6
replies
1.7k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 6.0 years ago by ★ 13k • written 6.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 pheatmap average
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
2
votes
1
reply
2.4k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2 rld pheatmap dds
updated 7.2 years ago by 43k • written 9.4 years ago by ▴ 10
4
votes
8
replies
8.4k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 7.3 years ago by 43k • written 9.4 years ago by ▴ 10
0
votes
0
replies
3.2k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
7.3 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
11k
views
Pheatmap clustering and row annotation
R pheatmap cutree
7.4 years ago meseretbrihanu ▴ 10
0
votes
1
reply
2.3k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 40
0
votes
1
reply
3.2k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
7.7 years ago vd4mmind • 0
0
votes
1
reply
1.2k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 7.7 years ago by ▴ 690 • written 7.7 years ago by ▴ 50
8
votes
1
reply
9.9k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.9 years ago by ▴ 690 • written 7.9 years ago by ▴ 670
0
votes
0
replies
6.8k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
8.3 years ago jarod_v6@libero.it ▴ 40
1
vote
1
reply
6.0k
views
adding margins around pheatmap plots
pheatmap
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
1
vote
2
replies
2.8k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.9 years ago John ▴ 30
0
votes
2
replies
2.0k
views
Unsupervised analysis problems
pheatmap unsupervised
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 40
4
votes
5
replies
4.4k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2 pheatmap
9.0 years ago jarod_v6@libero.it ▴ 40
4
votes
9
replies
8.8k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
9.1 years ago Deepak Tanwar ▴ 10
1
vote
0
replies
2.8k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
9.4 years ago AJC ▴ 10
35 results • Page 1 of 1
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Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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