Showing : pheatmap • reset
0
votes
3
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1.5k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 11 months ago by 68k • written 11 months ago by ▴ 50
0
votes
2
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1.2k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 15 months ago by 68k • written 15 months ago by • 0
0
votes
1
reply
621
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2 pheatmap
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
2
replies
1.2k
views
Heat Map
ColData pheatmap DESeq2
written 2.2 years ago by • 0
0
votes
1
reply
3.9k
views
Annotation in pheatmap
pheatmap
updated 3.2 years ago by ★ 4.1k • written 3.2 years ago by • 0
0
votes
2
replies
8.1k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.2 years ago Bhavana • 0
2
votes
4
replies
4.2k
views
Issues with Pheatmap
pheatmap
3.4 years ago axe880 • 0
0
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4
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19k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 3.0 years ago by 68k • written 4.1 years ago by • 0
1
vote
3
replies
14k
views
Sorting columns in pheatmap
pheatmap
updated 13 months ago by • 0 • written 4.4 years ago by • 0
0
votes
5
replies
7.3k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
written 4.5 years ago by ▴ 10
0
votes
1
reply
3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Plotting the most expressed genes after conducting DESeq2
DESeq2 pheatmap apeglm
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 10
0
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2
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11k
views
Add selected row names on pheatmap
R pheatmap
updated 4.8 years ago by ★ 4.9k • written 4.8 years ago by ▴ 30
0
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2
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6.6k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
2
votes
4
replies
13k
views
pheatmap for DEGs
normalization pheatmap
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by ▴ 20
5
votes
11
replies
4.2k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 5.4 years ago by 53k • written 5.4 years ago by ▴ 60
0
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1
reply
6.3k
views
Reordering clusters when plotting pheatmap in R
R pheatmap clusters
6.2 years ago ecg1g15 ▴ 30
0
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4
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3.5k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
6.5 years ago lmg • 0
0
votes
6
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2.0k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 6.6 years ago by ★ 13k • written 6.6 years ago by ▴ 10
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2
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2.0k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 pheatmap average
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
2
votes
1
reply
2.6k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2 rld pheatmap dds
updated 7.8 years ago by 43k • written 10.0 years ago by ▴ 10
4
votes
8
replies
8.8k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 7.9 years ago by 43k • written 10.0 years ago by ▴ 10
0
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0
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3.6k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
7.9 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
12k
views
Pheatmap clustering and row annotation
R pheatmap cutree
8.0 years ago meseretbrihanu ▴ 10
0
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1
reply
2.4k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 8.3 years ago by 43k • written 8.3 years ago by ▴ 40
0
votes
1
reply
3.5k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
8.3 years ago vd4mmind • 0
0
votes
1
reply
1.4k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 8.4 years ago by ▴ 690 • written 8.4 years ago by ▴ 50
8
votes
1
reply
11k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 8.5 years ago by ▴ 690 • written 8.5 years ago by ▴ 670
0
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0
replies
7.1k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
8.9 years ago jarod_v6@libero.it ▴ 40
1
vote
1
reply
6.4k
views
adding margins around pheatmap plots
pheatmap
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 10
1
vote
2
replies
3.1k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
9.5 years ago John ▴ 30
0
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2
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2.1k
views
Unsupervised analysis problems
pheatmap unsupervised
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 40
4
votes
5
replies
4.7k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2 pheatmap
9.6 years ago jarod_v6@libero.it ▴ 40
4
votes
9
replies
9.4k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
9.7 years ago Deepak Tanwar ▴ 10
1
vote
0
replies
2.9k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
10.0 years ago AJC ▴ 10
35 results • Page 1 of 1
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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0
Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …
Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k
Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…
Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k
There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k
What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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