Showing : pheatmap • reset
0
votes
3
replies
332
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 20 days ago by 67k • written 21 days ago by ▴ 50
0
votes
2
replies
576
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 5 months ago by 67k • written 5 months ago by • 0
0
votes
1
reply
429
views
Changed DESeq2 comparison value but the heatmap is still the same
DESeq2 pheatmap
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
2
replies
788
views
Heat Map
ColData pheatmap DESeq2
written 16 months ago by • 0
0
votes
1
reply
3.0k
views
Annotation in pheatmap
pheatmap
updated 2.3 years ago by ★ 4.1k • written 2.3 years ago by • 0
0
votes
2
replies
5.2k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.4 years ago Bhavana • 0
2
votes
4
replies
2.5k
views
Issues with Pheatmap
pheatmap
2.6 years ago axe880 • 0
0
votes
4
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17k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
3
replies
12k
views
Sorting columns in pheatmap
pheatmap
updated 3 months ago by • 0 • written 3.6 years ago by • 0
0
votes
4
replies
5.7k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
updated 3.6 years ago by ▴ 350 • written 3.6 years ago by ▴ 10
0
votes
1
reply
2.8k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Plotting the most expressed genes after conducting DESeq2
DESeq2 pheatmap apeglm
updated 3.7 years ago by 42k • written 3.7 years ago by ▴ 10
0
votes
2
replies
8.9k
views
Add selected row names on pheatmap
R pheatmap
updated 3.9 years ago by ★ 4.5k • written 3.9 years ago by ▴ 30
0
votes
2
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5.6k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
2
votes
4
replies
10k
views
pheatmap for DEGs
normalization pheatmap
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 20
5
votes
11
replies
3.3k
views
Heatmap only including DE genes?
heatmap coolmap pheatmap
updated 4.6 years ago by 51k • written 4.6 years ago by ▴ 60
0
votes
1
reply
5.3k
views
Reordering clusters when plotting pheatmap in R
R pheatmap clusters
5.4 years ago ecg1g15 ▴ 30
0
votes
4
replies
3.1k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.6 years ago lmg • 0
0
votes
6
replies
1.7k
views
stringasfactor = F changes the output of pheatmap, why?
deseq2 pheatmap
updated 5.7 years ago by ★ 13k • written 5.7 years ago by ▴ 10
0
votes
2
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1.7k
views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2 pheatmap average
updated 6.1 years ago by 67k • written 6.1 years ago by • 0
2
votes
1
reply
2.4k
views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2 rld pheatmap dds
updated 7.0 years ago by 42k • written 9.1 years ago by ▴ 10
4
votes
8
replies
8.3k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 7.0 years ago by 42k • written 9.2 years ago by ▴ 10
0
votes
0
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3.1k
views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap kmeans
7.1 years ago Assa Yeroslaviz ★ 1.5k
1
vote
1
reply
11k
views
Pheatmap clustering and row annotation
R pheatmap cutree
7.1 years ago meseretbrihanu ▴ 10
0
votes
1
reply
2.2k
views
Unsupervised heatmap use tpm or rlog gave different results
deseq2 tpm heatmap pheatmap
updated 7.4 years ago by 42k • written 7.4 years ago by ▴ 40
0
votes
1
reply
3.0k
views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap hclust R dendrogram
7.5 years ago vd4mmind • 0
0
votes
1
reply
1.2k
views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
updated 7.5 years ago by ▴ 690 • written 7.5 years ago by ▴ 50
8
votes
1
reply
9.7k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.7 years ago by ▴ 690 • written 7.7 years ago by ▴ 670
0
votes
0
replies
6.7k
views
Pheatmap: how to use breaks for pheatmap
pheatmap heatmap
8.1 years ago jarod_v6@libero.it ▴ 40
1
vote
1
reply
5.8k
views
adding margins around pheatmap plots
pheatmap
updated 8.2 years ago by ★ 13k • written 8.3 years ago by ▴ 10
1
vote
2
replies
2.7k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.7 years ago John ▴ 30
0
votes
2
replies
1.9k
views
Unsupervised analysis problems
pheatmap unsupervised
updated 8.7 years ago by 42k • written 8.7 years ago by ▴ 40
4
votes
5
replies
4.3k
views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2 pheatmap
8.8 years ago • updated 8.7 years ago jarod_v6@libero.it ▴ 40
4
votes
9
replies
8.5k
views
Upper triangular matrix heatmap using pheatmap package
pheatmap
8.9 years ago Deepak Tanwar ▴ 10
1
vote
0
replies
2.7k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
9.2 years ago AJC ▴ 10
35 results • Page 1 of 1
Recent ...
Replies
Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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