Showing : wgcna • reset
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Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
3.1 years ago S • 0
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0
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1.0k
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Problems running WGCNA
WGCNA
3.2 years ago S • 0
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0
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845
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coexpression networks
WGCNA igraph
3.3 years ago María José • 0
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0
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960
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A question about GWENA R/Bioconductor package
proteomics GWENA Proteomics WGCNA
3.3 years ago Abdullah • 0
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2
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3.0k
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 21 months ago by • 0 • written 3.3 years ago by • 0
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0
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1.5k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
3.3 years ago • updated 17 months ago bioinformaticssrm2011 • 0
2
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1
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1.3k
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 3.5 years ago by ▴ 50 • written 3.5 years ago by ▴ 10
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1
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1.8k
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WGCNA - Network construction and module detection
gene Clustering wgcna flashclust
updated 3.5 years ago by ▴ 50 • written 3.5 years ago by ▴ 20
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863
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MM-GS plot doesn't show any negative correlation
wgcna
3.6 years ago shubhankar.pawar • 0
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1
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1.9k
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WGCNA Export Eigengene Adjacency/Correlation values export
WGCNA
updated 3.6 years ago by • 0 • written 3.6 years ago by • 0
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0
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1.1k
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ARACNe Sample Size
grndata GRN ARACNE WGCNA
3.6 years ago Harrsha • 0
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0
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905
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Enrichment in genomic regions
Enrichment clusterPro WGCNA
3.6 years ago María José • 0
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0
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1.1k
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How to create consensus network from SampledBlockwiseModules in WGCNA?
NetworkInference SampledBlockWiseModules WGCNA
3.7 years ago as8020 • 0
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0
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635
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WGCNA consensusMEDdissimilrity
WGCNA
3.8 years ago María José • 0
1
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3
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2.6k
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WGCNA error
WGCNA
3.8 years ago ayabalbaa1990 • 0
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0
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1.4k
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The gene clusters from the WGCNA dendrogram output are not in order
Clustering WGCNA
3.8 years ago chiwut.wong • 0
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0
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1.1k
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FILTER GENES FOR WGCNA
WGCNA
3.8 years ago María José • 0
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0
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1.3k
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Only 1 gene/ feature is present in module after WGCNA analysis
RNASeq Clustering cluster WGCNA
3.9 years ago chiwut.wong • 0
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2
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2.3k
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WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna WGCNA
written 3.9 years ago by • 0
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0
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881
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WGCNA analsyis: Cytoscape visualization (Error in recalculating topological overlap)
analsyis WGCNA
3.9 years ago Amazing570 • 0
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0
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1.1k
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WGCNA with large Methylation matrix
wgcna R WGCNA Methylation
4.1 years ago Lorenzo • 0
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1
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1.1k
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adjacency matrix in WGCNA returns NA
Coexpressionnetwork WGCNA
written 4.1 years ago by • 0
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1
reply
2.2k
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WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 4.1 years ago by ★ 3.0k • written 4.1 years ago by ▴ 30
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1
reply
1.7k
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WGCNA Preservation error
preservation WGCNA
updated 2.1 years ago by • 0 • written 4.2 years ago by • 0
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1
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1.7k
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Outlier Removal WGCNA
RNASeq WGCNA
updated 4.2 years ago by 6.7k • written 4.2 years ago by ▴ 10
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0
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1.3k
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Removing low count/low variance genes
WGCNA
4.2 years ago Aya • 0
2
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9
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6.6k
views
Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.8 years ago by 43k • written 4.2 years ago by ▴ 10
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1
reply
1.7k
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WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 2.2 years ago by • 0 • written 4.2 years ago by • 0
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0
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2.4k
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How to choose singed or unsigned network in step-by-step WGCNA
WGCNA
4.2 years ago synat.keam • 0
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1
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1.6k
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 3.1 years ago by • 0 • written 4.3 years ago by ▴ 10
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3
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2.5k
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Problem getting soft threshold power using WGCNA for RNA-seq data
RNASeq WGCNA
4.3 years ago jms2520 ▴ 10
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1
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1.9k
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Summarising WGCNA data with modules and their corresponding gene ID and statistics
RNASeq WGCNA
4.3 years ago synat.keam • 0
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0
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1.1k
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WGCNA Consensus Module Sign Question
wgcna
4.4 years ago erik.burchard • 0
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2
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1.4k
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WGCA tutorial related question
WGCNA
4.4 years ago wes • 0
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0
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1.4k
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WGCNA error during network construction
WGCNA Network R
4.4 years ago gitanjali • 0
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1
reply
2.2k
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pre-proccessing of TCGA data for WGCNA
TCGAbiolinks WGCNA
updated 4.5 years ago by 43k • written 4.5 years ago by • 0
0
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0
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997
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WGCNA out of memory
wgcna RNASeq
4.6 years ago zli1 • 0
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2
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3.2k
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WGCNA adjust p value
WGCNA
written 4.6 years ago by ▴ 40
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0
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881
views
Working with Binary Categorical Data using WGCNA and Unsigned Networks
WGCNA
4.6 years ago schum266 ▴ 10
1
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1
reply
1.9k
views
Determining number of genes in each module based on color in WGCNA package
WGCNA
4.7 years ago schum266 ▴ 10
0
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1
reply
1.1k
views
Query regarding WGCNA module formation
WGCNA RNAseq RNASeqData
updated 4.7 years ago by ▴ 760 • written 4.7 years ago by • 0
0
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1
reply
935
views
Query regarding WGCNA module
WGCNA
updated 4.8 years ago by ▴ 50 • written 4.8 years ago by • 0
0
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1
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2.9k
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Removing batch effect by sva or combat and subsequent correlation analysis by WGCNA
WGCNA impute sva
updated 4.8 years ago by ▴ 60 • written 4.8 years ago by • 0
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0
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1.4k
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Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.9 years ago 2323982403 ▴ 60
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0
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1.3k
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Sample size on Differential Network Analysis
coexpression WGCNA
5.0 years ago Hanna ▴ 10
10
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1
reply
5.7k
views
WGCNA: Module preservation vs consensus analysis
WGCNA wgcna
updated 4.9 years ago by ▴ 70 • written 5.0 years ago by ▴ 60
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1
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1.7k
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Differential Network analysis
WGCNA
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by ▴ 10
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2
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2.5k
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WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
5.0 years ago jpwl2 • 0
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0
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1.8k
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WGCNA - TOM Similarity
WGCNA
5.1 years ago Svet • 0
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0
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1.3k
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Normalization for WGCNA on two organisms (virus-host)
RNA-Seq DESeq2 WGCNA Normalization
5.1 years ago wrzl • 0
336 results • Page 2 of 7
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Thanks both for this useful information.
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Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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