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2
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93
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limma Intercept vs No-intercept models completely changing DMR results?
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updated 39 minutes ago by 50k • written 4 hours ago by • 0
0
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1
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29
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package goseq seems to be not available on the latest version of R
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updated 1 hour ago by 50k • written 5 hours ago by • 0
0
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1
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CombineArrays for EPIC and EPIC V2
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8 hours ago Henry ▴ 10
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126
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0
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0
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0
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165
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
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2 days ago • updated 1 day ago kcarey • 0
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1
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74
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NEED FOR NESSASORY HELP
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updated 1 day ago by 50k • written 1 day ago by • 0
0
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71
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updated 1 day ago by 50k • written 1 day ago by • 0
0
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24
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flowStats for CyTOF
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1 day ago tholmes • 0
0
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2
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70
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updated 1 day ago by 41k • written 1 day ago by • 0
5
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6
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simpleaffy
updated 1 day ago by 65k • written 2.3 years ago by • 0
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1 day ago Ian D. ▴ 70
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2
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DiffBind
2 days ago • updated 1 day ago Ian D. ▴ 70
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
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written 1 day ago by • 0
0
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3
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107
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updated 1 day ago by ★ 4.1k • written 2 days ago by • 0
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2
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204
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3 days ago • updated 2 days ago Yveto • 0
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updated 2 days ago by 41k • written 3 days ago by • 0
0
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1
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114
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2 days ago shepherl 3.9k
14
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17
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13 days ago • updated 2 days ago Chris • 0
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3
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1
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3
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203 results • Page 1 of 5
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Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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