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6
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5
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476
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Estimating Cell Counts for EPIC V2 array data
FlowSorted.Blood.EPIC
minifi
written 11 weeks ago by
Kim
• 0
1
vote
4
replies
530
views
DEseq2 coefficient
DESeq2
coefficient
12 weeks ago • updated 17 days ago
JKim
• 0
0
votes
7
replies
449
views
DESeq filtering specific to contrasts
DESeq2
updated 29 days ago by
Michael Love
42k • written 3 months ago by
Emma
• 0
1
vote
5
replies
516
views
Can't post a question containing code?
Bioconductor
updated 8 days ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
0
votes
2
replies
948
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 3 days ago by
mariakenneth147
• 0 • written 18 months ago by
pharamac
• 0
1
vote
5
replies
1.5k
views
Cannot connect to ExperimentHub server
ExperimentHub
updated 11 days ago by
Jiayu
• 0 • written 5 months ago by
yanling
• 0
0
votes
2
replies
819
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.2 years ago by
lea
• 0
1
vote
3
replies
891
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 24 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
6
votes
10
replies
1.7k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 29 days ago by
i.atanasoai
• 0 • written 15 months ago by
mohammedtoufiq91
▴ 10
0
votes
2
replies
1.5k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 8 days ago by
maria.soler
• 0 • written 16 months ago by
kalavattam
▴ 10
5
votes
6
replies
2.8k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 16 days ago by
James W. MacDonald
65k • written 2.3 years ago by
yanchangjian2019
• 0
2
votes
3
replies
1.8k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 5 days ago by
bandconductor
• 0 • written 3.6 years ago by
ZheFrench
▴ 60
0
votes
2
replies
929
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by
araaaju
• 0
6
votes
19
replies
2.6k
views
DESeq2 a lot of genes showing up as differentially expressed that only have 1 sample with any expression
deseq2
updated 18 days ago by
Sey R.
• 0 • written 4.6 years ago by
hsbio
▴ 10
2
votes
5
replies
794
views
DESeq2 setting significant p-value
DESeq2
updated 29 days ago by
Michael Love
42k • written 5.0 years ago by
Merlin
▴ 10
4
votes
9
replies
3.1k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 3 days ago by
Yun
• 0 • written 5.2 years ago by
daniel.magnus.bader
▴ 50
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 11 days ago by
Gordon Smyth
50k • written 5.6 years ago by
CantExitVIM
▴ 10
3
votes
1
reply
1.5k
views
Job:
Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
job
Job
machine learning
deep learning
computational biology
written 6.3 years ago by
Shamith.Samarajiwa
▴ 180
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 9 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
2
votes
4
replies
1.7k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 10 days ago by
Chris
▴ 10 • written 7.4 years ago by
Pekka Kohonen
▴ 190
5
votes
8
replies
8.9k
views
Limma design with continuous and categorical covariates
limma
batch effect
covariates
microarray
updated 25 days ago by
hortense96
• 0 • written 7.8 years ago by
dmcleanuk
▴ 30
0
votes
3
replies
2.1k
views
maSigPro genes from clusters
masigpro
clustering
updated 1 day ago by
anne-laure
• 0 • written 7.9 years ago by
ls299
• 0
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma
microarray
statistics
updated 18 days ago by
XW
• 0 • written 8.0 years ago by
tati6406
• 0
0
votes
5
replies
2.9k
views
DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 13 days ago
Henrik Bengtsson
★ 2.4k
0
votes
3
replies
1.5k
views
Limma, eBayes different sample size of groups and adjustment
limma
limma
updated 18 days ago by
XW
• 0 • written 13.1 years ago by
Babara Mueller
▴ 10
0
votes
3
replies
3.7k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 12 days ago by
Caio
• 0 • written 13.1 years ago by
boczniak767
▴ 720
177 results • Page
4 of 4
Recent ...
Replies
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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