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6
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145
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Once again a "Model matrix not full rank"
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updated 4 hours ago by ★ 1.3k • written 1 day ago by ▴ 130
1
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226
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limma Intercept vs No-intercept models completely changing DMR results?
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updated 9 hours ago by 50k • written 13 hours ago by • 0
0
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1
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41
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package goseq seems to be not available on the latest version of R
goseq
updated 10 hours ago by 50k • written 14 hours ago by • 0
0
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2 days ago • updated 13 hours ago Chris • 0
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CombineArrays for EPIC and EPIC V2
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4 weeks ago • updated 13 hours ago Kim • 0
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updated 15 hours ago by 41k • written 15 hours ago by • 0
0
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16 hours ago Zainab • 0
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17 hours ago Henry ▴ 10
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2
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106
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4 days ago • updated 1 day ago Aurora • 0
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9 days ago • updated 1 day ago glaciya2018 • 0
0
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1
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166
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Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
updated 1 day ago by 50k • written 1 day ago by ▴ 10
0
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106
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2 days ago • updated 1 day ago kcarey • 0
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NEED FOR NESSASORY HELP
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updated 1 day ago by 50k • written 1 day ago by • 0
0
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updated 1 day ago by 50k • written 1 day ago by • 0
0
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26
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flowStats for CyTOF
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1 day ago tholmes • 0
0
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2
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72
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updated 1 day ago by 41k • written 1 day ago by • 0
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6
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
updated 1 day ago by 65k • written 2.3 years ago by • 0
0
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0
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34
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1 day ago yvonneh • 0
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1 day ago Ian D. ▴ 70
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2
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DiffBind
3 days ago • updated 1 day ago Ian D. ▴ 70
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40
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Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
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0
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3
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110
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updated 1 day ago by ★ 4.1k • written 2 days ago by • 0
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3 days ago • updated 2 days ago Yveto • 0
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updated 2 days ago by 41k • written 3 days ago by • 0
0
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117
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2 days ago shepherl 3.9k
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17
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13 days ago • updated 2 days ago Chris • 0
0
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3
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10 weeks ago • updated 2 days ago JKim • 0
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updated 3 days ago by • 0 • written 7.9 years ago by • 0
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updated 3 days ago by 65k • written 4 days ago by • 0
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23
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5 weeks ago • updated 3 days ago Chris • 0
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updated 3 days ago by • 0 • written 4.6 years ago by ▴ 10
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3
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updated 3 days ago by ★ 1.9k • written 15 days ago by • 0
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Fold change calculation in Diffbind vs. DESEQ2?
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updated 3 days ago by 41k • written 3 days ago by • 0
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91
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updated 3 days ago by 41k • written 4 days ago by • 0
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Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
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4 days ago Chris • 0
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Could we detect difference at pathway level but not significant different at gene level?
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updated 4 days ago by 65k • written 5 weeks ago by • 0
3
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
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updated 5 days ago by ★ 4.1k • written 5 days ago by ▴ 10
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how to do Differential splicing from SGSeq analysis
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9 days ago • updated 5 days ago Sara • 0
49 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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