0
votes
0
replies
20
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
9 hours ago 315005358 • 0
0
votes
0
replies
22
views
Error in termSig <= adjs.cutOff when using topGO ks + elim
topGO
19 hours ago adendekk • 0
0
votes
1
reply
57
views
error
Biobase
22 hours ago NATASHA • 0
0
votes
1
reply
63
views
Differential gene expression analysis results
DESeq2 DifferentialExpression
updated 1 day ago by ★ 4.1k • written 1 day ago by • 0
0
votes
0
replies
30
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer ShinyApps
1 day ago neilzhao ▴ 30
0
votes
1
reply
56
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 2 days ago by ★ 4.1k • written 2 days ago by • 0
1
vote
2
replies
171
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
2 days ago • updated 1 day ago Dylan.Sheerin • 0
2
votes
7
replies
235
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
3 days ago • updated 6 hours ago sajadahmad41454 • 0
0
votes
0
replies
35
views
Treeio as.treedata function seq lenght error
treeio
3 days ago nromerov • 0
1
vote
1
reply
131
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
updated 3 days ago by 65k • written 4 days ago by • 0
3
votes
10
replies
315
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 1 day ago by 65k • written 4 days ago by • 0
0
votes
1
reply
69
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 4 days ago by 3.9k • written 4 days ago by • 0
1
vote
1
reply
108
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 4 days ago by 65k • written 4 days ago by • 0
0
votes
0
replies
53
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
4 days ago Dinesh • 0
3
votes
5
replies
223
views
Help with running egsea()
EGSEA
4 days ago • updated 3 days ago Chris • 0
3
votes
1
reply
109
views
How to save the DEXSeq results
DEXSeq
updated 5 days ago by 42k • written 5 days ago by • 0
1
vote
1
reply
102
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 5 days ago by 42k • written 5 days ago by ▴ 70
0
votes
3
replies
148
views
Couldn't connect to server while using "pathways"
graphite
updated 4 days ago by 42k • written 5 days ago by • 0
3
votes
4
replies
237
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
updated 3 days ago by 50k • written 5 days ago by • 0
3
votes
4
replies
458
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 3 days ago by ★ 6.5k • written 5 days ago by • 0
2
votes
2
replies
186
views
fgsea significant result
fgsea
6 days ago • updated 5 days ago Chris • 0
1
vote
2
replies
360
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 7 days ago by 50k • written 7 days ago by • 0
2
votes
3
replies
209
views
package goseq seems to be not available on the latest version of R
goseq
updated 5 days ago by 50k • written 7 days ago by ▴ 20
2
votes
3
replies
212
views
Too many significant genes when integrating gtex and tcga
RNA-seq DESeq2
updated 6 days ago by ★ 4.1k • written 7 days ago by • 0
1
vote
1
reply
147
views
Handling multiple differential expression comparisons
DESeq2
updated 6 days ago by 42k • written 7 days ago by ▴ 10
0
votes
0
replies
96
views
dba.plotProfile() plotting and interpretation
DiffBind
7 days ago Henry ▴ 10
0
votes
6
replies
248
views
Once again a "Model matrix not full rank"
DESeq2 design coldata
updated 7 days ago by ★ 1.4k • written 8 days ago by ▴ 130
4
votes
2
replies
584
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea edgeR
8 days ago • updated 4 days ago gene_bioconductor ▴ 10
0
votes
1
reply
145
views
NEED FOR NESSASORY HELP
RNASeqData edgeR
updated 8 days ago by 50k • written 8 days ago by • 0
0
votes
1
reply
129
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 8 days ago by 50k • written 8 days ago by • 0
0
votes
0
replies
75
views
flowStats for CyTOF
flowStats
8 days ago tholmes • 0
0
votes
2
replies
132
views
DESeq2 v1.35.0
DESeq2
updated 9 days ago by 42k • written 9 days ago by • 0
0
votes
0
replies
70
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
9 days ago yvonneh • 0
0
votes
0
replies
63
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
9 days ago Ian D. ▴ 70
0
votes
1
reply
105
views
Job: Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 9 days ago by • 0
0
votes
2
replies
174
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
9 days ago • updated 8 days ago kcarey • 0
0
votes
3
replies
176
views
Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 9 days ago by ★ 4.1k • written 9 days ago by • 0
1
vote
3
replies
264
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 3 days ago by ★ 4.1k • written 9 days ago by • 0
4
votes
0
replies
108
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
9 days ago shepherl 3.9k
0
votes
0
replies
120
views
Empty table plot using plotGseaTable()
fgsea
9 days ago • updated 7 days ago Chris • 0
0
votes
3
replies
190
views
Store output of matchPWM()
biostrings Biostrings
updated 9 days ago by 65k • written 10 days ago by ▴ 70
0
votes
3
replies
206
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
10 days ago • updated 3 days ago Ian D. ▴ 70
1
vote
2
replies
255
views
Get genomic coordinates of CpGs sites (chromosomes, genomic position)
GenomeWideAssociation SequenceAnnotation MethylationArray GenomicDistributionsData
10 days ago • updated 9 days ago Yveto • 0
0
votes
3
replies
270
views
log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 9 days ago by 42k • written 10 days ago by • 0
3
votes
4
replies
240
views
Help with error using camera() in limma
CAMERA limma
11 days ago • updated 10 days ago Chris • 0
1
vote
1
reply
138
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 11 days ago by 42k • written 11 days ago by • 0
0
votes
0
replies
82
views
News: BioC2024 deadlines approaching
BioC2024 Bioconductor Community
11 days ago Maria Doyle ▴ 70
0
votes
1
reply
123
views
putting my own expression data in deseq2
DESeq2
updated 11 days ago by ★ 4.1k • written 11 days ago by • 0
0
votes
2
replies
146
views
Timecourse RNASeq analysis
DESeq2 ImpulseDE2 timecour timecoursedata moanin
11 days ago • updated 8 days ago Aurora • 0
0
votes
1
reply
108
views
Version 3.15 S4Vectors packages are missing
S4Vectors
updated 11 days ago by 3.9k • written 11 days ago by • 0
45,637 results • Page 1 of 913
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Answer: SingleR Label.Ont by Denis • 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results by sajadahmad41454 • 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
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A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
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Comment: Log-cpm values from limma
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