5
votes
3
replies
3.2k
views
Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chunk
rmarkdown suppressWarning warning
updated 2.9 years ago by ★ 6.6k • written 4.1 years ago by ★ 13k
0
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5
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1.5k
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ANOVA-like vs direct contrast
edgeR
4.0 years ago fcamus • 0
1
vote
1
reply
2.4k
views
Error in rowMeans(y$exprs, na.rm = TRUE) : 'x' must be numeric
limma
updated 4.0 years ago by 53k • written 4.0 years ago by • 0
1
vote
2
replies
1.8k
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Bioconductor-RipSeeker
RipSeeker RIp-seq
updated 4.0 years ago by 68k • written 4.0 years ago by • 0
0
votes
3
replies
1.7k
views
DESeq2: model matrix is not full rank
DESeq2
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
0
votes
1
reply
1.1k
views
Error in 'differential_abundance'
phyloseq devtools
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
0
votes
1
reply
1.4k
views
Ensembl REST API Endpoints
ensemblVEP EnsDb.Hsapiens.v79
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
4
votes
1
reply
1.7k
views
Why is "SimpleList" not inheriting "list" ?
S4Vectors
updated 4.0 years ago by 16k • written 4.1 years ago by ▴ 180
0
votes
1
reply
1.5k
views
RNAseq using galaxy
RNASeq
updated 4.0 years ago by ★ 5.0k • written 4.0 years ago by • 0
2
votes
7
replies
1.7k
views
not receive notification after successful push to bioconductor with version bump
RiboDiPA
4.0 years ago Jiping Wang ▴ 90
0
votes
1
reply
1.5k
views
Unable to label in Enhanced Volcano
Visualization
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
0
votes
3
replies
1.7k
views
Problem with intronic variants in VariantAnnotation
VariantAnnotation
updated 3.8 years ago by • 0 • written 4.0 years ago by • 0
0
votes
0
replies
1.4k
views
Job: International PhD rotation students at FIMM-EMBL/DSHealth (University of Helsinki) in Molecular Medicine, Genomics, Bioinformatics, Neuroscience, Com…
ComputationalBiomedicine AI UniversityHelsinki PhD Bioinformatics
4.0 years ago Alyce • 0
0
votes
4
replies
3.7k
views
internal error in trio library when trying to use lfmm() in LEA package
lfmm LEA
updated 10 months ago by • 0 • written 4.6 years ago by • 0
1
vote
1
reply
1.3k
views
can't install tscR
tscR
updated 4.0 years ago by 6.7k • written 4.0 years ago by • 0
0
votes
1
reply
1.6k
views
Using controlAmbience with multiple samples and conditions
DropletUtils
updated 4.0 years ago by ★ 29k • written 4.0 years ago by ▴ 70
0
votes
0
replies
1.0k
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
4.0 years ago markkelly1983 ▴ 20
0
votes
0
replies
856
views
Complex design in DESeq2 doesn't seem to be supported in Glimma
limma Glimma RNASeq DESeq2
4.0 years ago Jonas • 0
0
votes
0
replies
1.5k
views
Glimma: Error: Length of groups must be equal to the number of columns in counts
Glimma RNASeq
4.0 years ago Jonas • 0
0
votes
2
replies
1.5k
views
Using DESeq2 to analyse multi-variate design resulting in testing the wrong parameter
batch RNASeq BatchEffect DESeq2
updated 4.0 years ago by ★ 13k • written 4.0 years ago by • 0
0
votes
3
replies
1.7k
views
Is it possible to specify random nested factor in DEseq2?
nested DESeq2
updated 3.9 years ago by 43k • written 4.0 years ago by • 0
11
votes
11
replies
17k
views
cannot install edgeR on M1 Mac
apple m1 installation silicon
updated 4.0 years ago by 53k • written 4.5 years ago by ▴ 90
2
votes
2
replies
5.2k
views
EdgeR installation issue
limma edgeR DESeq2
4.0 years ago aonghus • 0
0
votes
0
replies
1.0k
views
Using VIPER to compare protein activity in normal vs diseased samples
viper
4.0 years ago tjbencomo • 0
0
votes
2
replies
1.8k
views
sigh of log2FC values in DESeq2
sign FoldChange DESeq2 reference
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
0
votes
1
reply
1.6k
views
WGCNA Preservation error
preservation WGCNA
updated 23 months ago by • 0 • written 4.0 years ago by • 0
0
votes
4
replies
2.8k
views
RprotobufLib installation error in R 4.1.2
RProtoBufLib
updated 3.7 years ago by • 0 • written 4.0 years ago by • 0
0
votes
0
replies
656
views
Understanding the output from dasper::junction_annotation()
dasper
4.0 years ago zli16 • 0
0
votes
1
reply
2.5k
views
Error in install package
clusterProfiler
updated 4.0 years ago by 4.2k • written 4.0 years ago by • 0
0
votes
1
reply
2.4k
views
Installation problem
MSnbase
updated 4.0 years ago by 1.6k • written 4.0 years ago by • 0
2
votes
2
replies
8.6k
views
"Paired-end reads were detected in single-end read library"
featureCounts Rsubread
4.0 years ago Chise ▴ 10
0
votes
0
replies
1.0k
views
Compare DNA sequence pairs and compute lengths and coordinates
DNASeq CNEr
4.0 years ago Md Abrar • 0
4
votes
4
replies
3.2k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 4.0 years ago by ▴ 120 • written 7.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
gene id mapping issue
RNASeq
4.0 years ago waltsonwang88 • 0
0
votes
1
reply
1.4k
views
how to analysis chip-seq data
systemPipeR
updated 4.0 years ago by ▴ 100 • written 4.0 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Outlier Removal WGCNA
RNASeq WGCNA
updated 4.0 years ago by 6.7k • written 4.0 years ago by ▴ 10
3
votes
3
replies
2.2k
views
GenomicFeatures::makeTxDbFromUCSC failing with an error: identical(current_classes, .UCSC_TXCOL2CLASS) is not TRUE
genomicfea GenomicFeatures
updated 3.7 years ago by 68k • written 4.0 years ago by ▴ 30
0
votes
3
replies
1.6k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 4.0 years ago by ▴ 780 • written 4.0 years ago by • 0
0
votes
2
replies
2.4k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 4.0 years ago by ★ 5.0k • written 4.0 years ago by • 0
3
votes
2
replies
1.8k
views
Ashr and IHW
Ashr LFCShrinkage IHW DESeq2
4.0 years ago Bex • 0
1
vote
1
reply
1.9k
views
Issue with lengthConnectors in EnhancedVolcano
EnhancedVolcano
updated 2.0 years ago by • 0 • written 4.0 years ago by ▴ 10
0
votes
0
replies
798
views
do DNAcopy do copy number segmentation need separate between tumor samples and mormal samples
DNAcopy
4.0 years ago xingyu • 0
1
vote
1
reply
1.6k
views
DiffBind scoreCol value question
DiffBind ChIPSeq chipseq
updated 4.0 years ago by ★ 5.2k • written 4.0 years ago by • 0
0
votes
3
replies
2.1k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 4.0 years ago by ★ 2.1k • written 4.0 years ago by • 0
0
votes
1
reply
1.2k
views
Problem in ion intensity
MSnbase
updated 4.0 years ago by 1.6k • written 4.0 years ago by • 0
0
votes
0
replies
1.3k
views
Removing low count/low variance genes
WGCNA
4.0 years ago Aya • 0
1
vote
3
replies
3.0k
views
Enhancedvolcano labels superimposed on points
EnhancedVolcano
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
0
votes
0
replies
980
views
DNABarcodes - hamming distance dependent on sequence direction?
DNABarcodes
4.0 years ago daniel.zhang • 0
2
votes
9
replies
6.3k
views
Deseq2 normalization for WGCNA
RNASeq Deseq2 DESeq2 WGCNA
updated 3.7 years ago by 43k • written 4.0 years ago by ▴ 10
0
votes
2
replies
1.3k
views
DeSeq2 - design formula for enrichment on combinated conditions AB, not A, not B
conditions design DESeq2 Synergy
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
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