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15 months ago sukeshinik5 ▴ 20
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15 months ago Andreas.Herbst • 0
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15 months ago Jane_Huang • 0
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For feline genome
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Many DEGs (Is a high percentage of DEGs acceptable in DESeq2)?
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Rstudio died when put more than three letters in subseting a SummarizedExperiment object
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15 months ago Shuo GG • 0
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Generating Boxplots for Gene Expression by CellType in NanoStringGeoMXSet
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15 months ago Cinque • 0
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Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduct unsupervised clustering analysis?
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2
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Inconsistent result in edgeR
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15 months ago hiroko.ohmiya • 0
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
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Student
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updated 15 months ago by ▴ 60 • written 15 months ago by • 0
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15 months ago ronin • 0
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When doing differential methylation using the sesame package, seems to only go one way
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updated 15 months ago by ▴ 20 • written 15 months ago by ▴ 10
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How to use removeBatchEffect for removing effect of multiple confounding variables
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updated 15 months ago by 68k • written 9.6 years ago by ▴ 10
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Trying to understand basic DiffBind usage
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15 months ago Alejandro • 0
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modelGeneVar in MulticoreParam: wrong args for environment subassignment
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15 months ago Lluís Revilla Sancho ▴ 760
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How to read OSCA book?
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15 months ago zr • 0
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Dealing with 0 miRNA counts in DESeq2 analysis and influence in adjusted p-value
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QSEA:Error in h(simpleError(msg, call))
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15 months ago kf • 0
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Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjusting for Covariates?
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updated 15 months ago by 68k • written 15 months ago by ▴ 20
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clusterProfiler: BgRatio N value does not match the size of the gene universe that has GO annotations.
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updated 15 months ago by ★ 4.1k • written 15 months ago by • 0
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Mark seleced variables in the x-loading plot
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15 months ago Ragnhild • 0
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15 months ago info ▴ 10
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updated 15 months ago by 68k • written 15 months ago by • 0
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15 months ago • updated 14 months ago Arindam ▴ 80
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16 months ago • updated 15 months ago ramiro.barrantes ▴ 10
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Help with design matrix for RNA-seq data using edgeR
edgeR RNASeqData
updated 16 months ago by 53k • written 16 months ago by • 0
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[DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Application
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updated 16 months ago by 43k • written 16 months ago by • 0
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Problem merging metadata and feature-table before analysing LEfSe on R
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16 months ago 샤니쿠마리 • 0
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46,705 results • Page 16 of 935
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Comment: Converting Probe IDs to HGNC symbols by Manav ▴ 10
ah thank u so much
Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
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Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
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