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DiffBind for MBD-seq
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Job: Ensembl Job Vacancies
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updated 15 months ago by 53k • written 15 months ago by • 0
0
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1
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764
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News: BioCAsia 2024 Registration Now Open!
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15 months ago Maria Doyle ▴ 110
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Questions in Regards to LFC shrinkage in DESeq2
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15 months ago Gordon • 0
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Gene filtering in DESeq2
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Inquiry on Using DESeq2 for Analyzing Differential Translation Efficiency
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voom does not seem to properly correct for library size
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Missing test data for RiboProfiling package
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2
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AffylmGUI does not start wit R 4.4.1
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updated 14 months ago by 53k • written 15 months ago by ▴ 30
0
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DESeq design with and without intercept is giving different results
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5
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1.5k
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RNASeq normlization for samples with global shift in gene expression
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updated 15 months ago by 53k • written 15 months ago by • 0
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3
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Merging multi-fastq samples in recount3
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recount
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updated 15 months ago by ★ 1.1k • written 3.6 years ago by • 0
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Job: PhD position: Analysis of epistatic interactions in enzymes using long-read sequencing data
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BioCAsia 2024 Abstract Deadline - August 26th
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15 months ago Maria Doyle ▴ 110
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updated 15 months ago by 53k • written 15 months ago by • 0
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CleanUpRNAseq package
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Create TidySummarizedExperiment from RangedSummarizedExperiment?
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updated 15 months ago by • 0 • written 21 months ago by • 0
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2
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# Invalid keytype: GOALL. Please use the keytypes method to see a listing of valid arguments.
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updated 15 months ago by 68k • written 15 months ago by • 0
6
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What is the importance of `--countReadPairs` in featureCounts on paired end data?
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updated 11 months ago by ▴ 20 • written 15 months ago by • 0
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
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15 months ago • updated 9 months ago Ian D. ▴ 70
0
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947
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15 months ago Jiahao Tian • 0
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15 months ago BioinfGuru ▴ 70
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the count matrix have decimal values
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updated 15 months ago by 68k • written 15 months ago by • 0
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updated 15 months ago by ▴ 70 • written 15 months ago by • 0
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Recommendations for DESeq2 Independent Filtering with Pseudobulk Data
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16 months ago • updated 15 months ago Bob ▴ 30
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623
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Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
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updated 15 months ago by 43k • written 15 months ago by • 0
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updated 15 months ago by • 0 • written 15 months ago by • 0
3
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updated 15 months ago by 53k • written 15 months ago by ▴ 10
0
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FlowSOM library requires igraph but igraph does not install
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get_snp
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updated 15 months ago by 68k • written 15 months ago by • 0
0
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15 months ago user_bioinfo • 0
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comparing common differentially expressed genes from two Rna-Seq Dataset.
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written 15 months ago by • 0
3
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DESeq2: How to Compare the Condition Effects of Two Different Treatments?
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updated 15 months ago by ★ 1.4k • written 16 months ago by • 0
2
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DESeq2 is it OK to scale transformed data in order to plot heatmaps?
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updated 15 months ago by ★ 5.0k • written 15 months ago by • 0
0
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1
reply
622
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DiffBind remove Unplace Chromosome (chrUn)
DiffBind
15 months ago mdidish ▴ 10
0
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0
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522
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DiffBind dba.plotprofile y-axis range
DiffBind
15 months ago Tara • 0
2
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4
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Bioconductor Submission question
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15 months ago XFWu • 0
2
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3
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RUV - Does my data need further normalisation?
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16 months ago • updated 15 months ago BioinfGuru ▴ 70
2
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2
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883
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Why is the inclusion of RUVs not reflected in the EDA plots produced from normalised counts extracted from deseq2?
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15 months ago BioinfGuru ▴ 70
0
votes
0
replies
470
views
proActiv-promoter analysis
proActiv Transcriptomics
16 months ago wang.xiangyu • 0
46,689 results • Page 17 of 934
Recent ...
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Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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