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17 months ago miriam.lloriansopena • 0
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17 months ago silvaesilva.da • 0
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DESeq2 returns results for group with just one replicate
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18 months ago JG13 • 0
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46,691 results • Page 21 of 934
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Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
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I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
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Answered here: https://support.bioconductor.org/p/16318/
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