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3
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1.3k
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limma Differentialenrichmentanalysis DEP
updated 22 months ago by 53k • written 22 months ago by • 0
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2
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Impute does not work
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22 months ago Laura • 0
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3
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"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
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22 months ago jbgnielson • 0
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22 months ago mperalc • 0
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2
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Error in featureCounts matrix
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updated 22 months ago by 53k • written 22 months ago by • 0
1
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7
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1.8k
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Library size normalization in methylation count analysis
edgeR MethylationArray
updated 14 months ago by • 0 • written 22 months ago by • 0
0
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0
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645
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Unclear exon-exon connection after RSubjunc() usage
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22 months ago thomas.heigl.ibk • 0
0
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1
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error in mapIds function
mapIds biomaRt
updated 22 months ago by 700 • written 22 months ago by • 0
1
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4
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1.6k
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DEseq2 coefficient
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22 months ago • updated 20 months ago JKim • 0
3
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5
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DESEQ Inquiry
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updated 22 months ago by 43k • written 22 months ago by ▴ 10
2
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1
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773
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Limma Question
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updated 22 months ago by 43k • written 22 months ago by ▴ 10
0
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1
reply
791
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How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
2
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2
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858
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locfunc not found in DESeq2
locfunc DESeq2 shorth estimateSizeFactors
22 months ago Hope ▴ 10
0
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6
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2.5k
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StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 22 months ago by • 0 • written 22 months ago by • 0
0
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2
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873
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problem in installing the new version of bioconductor
ANCOMBC
updated 22 months ago by 4.2k • written 22 months ago by • 0
1
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2
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891
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evaluate the variable importance on genes
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22 months ago Meme • 0
0
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3
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871
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library sizes differ extremely after dds
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updated 22 months ago by 43k • written 22 months ago by • 0
1
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1
reply
785
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Filter genes that have >= 1 cpm and are expressed in 80% of the case in the group (case=Yes, control=No)
RBioinf
updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
1
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4
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1.6k
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Comparing gene expression across three tissue types to identify any difference.
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22 months ago James Aiden • 0
3
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8
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2.5k
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Downloading package mixOmics
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22 months ago noortje_bloem94 • 0
1
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2
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977
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Bioconductor unreachable?
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22 months ago edoardo • 0
0
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13
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1.9k
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Unexpected behavior of lfcShrink() function in DESeq2 analysis
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updated 22 months ago by 43k • written 22 months ago by • 0
1
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1
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1.7k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 22 months ago by 68k • written 22 months ago by • 0
3
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1
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1.6k
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Mapping LOC genes between species using Orthology.eg.db (or a similar tool)
Orthology.eg.db
updated 22 months ago by 68k • written 22 months ago by ▴ 30
0
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0
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820
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Job: Statistics Lectureships at St Andrews
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22 months ago Andy Lynch ▴ 120
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3
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9
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limma fo continous variables
limma DEGseq
updated 22 months ago by 68k • written 22 months ago by • 0
0
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0
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573
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22 months ago Dillon • 0
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5
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1.0k
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vst transformation and zero counts
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updated 22 months ago by ★ 5.0k • written 22 months ago by ▴ 740
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Installation problem of rtracklayer on Bioconductor version 3.19
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updated 22 months ago by 4.2k • written 22 months ago by • 0
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12
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How to calculate p value when comparing two sets of DEGs and not applying interaction
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22 months ago paria.alipour • 0
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3
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826
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22 months ago michael.shapiro • 0
0
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3
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1.5k
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utf-8 codec can't decode byte 0xd5
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updated 22 months ago by 43k • written 22 months ago by • 0
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updated 22 months ago by 68k • written 22 months ago by ▴ 20
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2
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868
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limma model matrix questions
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22 months ago whyw6948 • 0
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507
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updated 22 months ago by ★ 5.0k • written 22 months ago by • 0
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22 months ago • updated 3 months ago boczniak767 ▴ 740
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Invalid UTF-8
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updated 22 months ago by 6.7k • written 22 months ago by • 0
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0
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741
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22 months ago Meghana • 0
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3
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updated 22 months ago by 43k • written 23 months ago by • 0
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Pseudobulk-DESeq2 analyze multiple cell types at once?
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updated 22 months ago by 43k • written 23 months ago by • 0
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1.3k
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updated 20 months ago by 43k • written 23 months ago by • 0
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2
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875
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23 months ago • updated 22 months ago ccshao ▴ 70
0
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689
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updated 22 months ago by 43k • written 22 months ago by • 0
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3
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frma normalization
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updated 22 months ago by 68k • written 23 months ago by • 0
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FCS3.2 reading
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updated 21 months ago by ▴ 360 • written 23 months ago by ▴ 30
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updated 22 months ago by 53k • written 23 months ago by • 0
2
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23 months ago • updated 22 months ago tsl0026 • 0
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23 months ago • updated 22 months ago pl23 • 0
46,709 results • Page 31 of 935
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
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A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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