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News:
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flowBeads
24 days ago
bocsci11
• 0
0
votes
0
replies
98
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Cannot use `readVcf()` on a file created with `writeVcf()`
VariantAnnotation
29 days ago
Stevie Pederson
• 0
0
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0
replies
87
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Enzyme Engineering
BioTIP
24 days ago
bocchemistry
• 0
1
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0
replies
270
views
News:
Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 2 days ago
shepherl
3.9k
0
votes
1
reply
104
views
Input Question for deseq.r
RSeqAn
updated 23 days ago by
ATpoint
★ 4.1k • written 23 days ago by
Nina
• 0
0
votes
0
replies
19
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The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
9 hours ago
315005358
• 0
0
votes
0
replies
132
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One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
16 days ago • updated 8 days ago
glaciya2018
• 0
0
votes
0
replies
91
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
17 days ago
Dario Strbenac
★ 1.5k
0
votes
1
reply
125
views
what is the sampleFiles
chipseq
updated 25 days ago by
James W. MacDonald
65k • written 25 days ago by
zhulin
• 0
0
votes
0
replies
102
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I am trying to detect alternative splicing.
ASpli
21 days ago
Sebashish
• 0
0
votes
0
replies
35
views
Treeio as.treedata function seq lenght error
treeio
3 days ago
nromerov
• 0
2
votes
13
replies
451
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
19 days ago • updated 16 days ago
fernanda.backsouza
▴ 10
0
votes
0
replies
22
views
Error in termSig <= adjs.cutOff when using topGO ks + elim
topGO
18 hours ago
adendekk
• 0
0
votes
1
reply
185
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DESeq2 gives an error and R crashes
DESeq2
4 weeks ago • updated 29 days ago
Shefali
• 0
0
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0
replies
89
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News:
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flowBeads
24 days ago
creativepeptides2018
• 0
2
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7
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235
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deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
3 days ago • updated 5 hours ago
sajadahmad41454
• 0
1
vote
2
replies
167
views
Error in champ.load(): The following specified files do not exist
ChAMP
23 days ago
Sherin
• 0
0
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0
replies
70
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
9 days ago
yvonneh
• 0
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 2 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
0
votes
0
replies
63
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
9 days ago
Ian D.
▴ 70
1
vote
0
replies
310
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
22 days ago • updated 21 days ago
BioinfGuru
▴ 30
1
vote
3
replies
874
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 17 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
0
replies
90
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News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
29 days ago
shepherl
3.9k
0
votes
0
replies
100
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Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
25 days ago
Virangika
• 0
0
votes
0
replies
86
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Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
20 days ago
vaxahey107
• 0
0
votes
0
replies
96
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
24 days ago
Maliha Tabassum
• 0
2
votes
2
replies
175
views
[DiffBind] Obtaining normalization factors
DiffBind
29 days ago • updated 25 days ago
Henry
▴ 10
0
votes
0
replies
77
views
News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
18 days ago
info
▴ 10
0
votes
0
replies
120
views
Empty table plot using plotGseaTable()
fgsea
9 days ago • updated 7 days ago
Chris
• 0
0
votes
0
replies
30
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
1 day ago
neilzhao
▴ 30
0
votes
1
reply
1.3k
views
Tutorial:
Online workshop "Working with ChatGPT in R" 2023-03-09
chatgpt
programming
updated 28 days ago by
gptnederlands.nl
• 0 • written 14 months ago by
Wolfgang Huber
★ 13k
0
votes
4
replies
247
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
24 days ago • updated 21 days ago
lonn
• 0
0
votes
0
replies
53
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
4 days ago
Dinesh
• 0
0
votes
0
replies
82
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
11 days ago
Maria Doyle
▴ 70
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 24 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
0
votes
2
replies
259
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
18 days ago • updated 16 days ago
shuwangxinze1996
• 0
3
votes
1
reply
1.5k
views
Job:
Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
job
Job
machine learning
deep learning
computational biology
written 6.3 years ago by
Shamith.Samarajiwa
▴ 180
1
vote
2
replies
227
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
23 days ago • updated 22 days ago
Le
• 0
0
votes
8
replies
362
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 16 days ago by
swbarnes2
★ 1.4k • written 18 days ago by
Aaliya
• 0
0
votes
0
replies
94
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
17 days ago • updated 12 days ago
Sara
• 0
0
votes
3
replies
268
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 22 days ago by
W. Evan Johnson
▴ 850 • written 29 days ago by
schlumbohm
• 0
0
votes
0
replies
84
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
12 days ago • updated 11 days ago
Chris
• 0
0
votes
0
replies
126
views
Warning while loading DEP package
DEP
updated 23 days ago by
shepherl
3.9k • written 23 days ago by
Namrata
• 0
0
votes
2
replies
266
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
5 weeks ago • updated 22 days ago
isaac.vock
• 0
0
votes
3
replies
176
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 9 days ago by
ATpoint
★ 4.1k • written 9 days ago by
james.zhang20
• 0
0
votes
0
replies
75
views
flowStats for CyTOF
flowStats
8 days ago
tholmes
• 0
196 results • Page
4 of 4
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Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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