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544 results • Page 1 of 11
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Comment: edgeR design between and within subjects by wuwenhui2 • 0
Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, using the d…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy by Daniel • 0
Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification by Michael Love 43k
Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0
Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …
Answer: affy::rma results doesn't match with ncbi website by James W. MacDonald 68k
Please note that RMA is a method intended to normalize and summarize a set of samples rather than a single sample (it doesn't make much sen…
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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