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4
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55
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Multi-factor paired RNAseq differential analysis with DEseq2
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updated 8 hours ago by ▴ 970 • written 15 hours ago by • 0
1
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2
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Unable to install Rhtslib in R-4.1.1
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17 hours ago • updated 16 hours ago cf2209 • 0
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18 hours ago Bumble • 0
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22 hours ago M.M.M.M. • 0
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fgsea not downloading due to new r version. Is there a way around this?
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1 day ago • updated 13 hours ago amir.khan • 0
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MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL
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42
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Swish with more than two conditions. Add support for contrasts?
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1 day ago devbhavin20 • 0
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22
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1 day ago Amandeep • 0
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4
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Problem to execute a rowttest.
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ERROR: unable to find an inherited method for function ‘dispersions<-’ for signature ‘"DESeqDataSet",
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2 days ago • updated 1 day ago aedavids ▴ 10
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4
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185
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0
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62
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0
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7 days ago zroger499 • 0
1
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2
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airway
updated 7 days ago by ▴ 990 • written 7 days ago by • 0
0
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reply
51
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DiffBind issue: zero values for all peaks in one chromosome
DiffBind
updated 7 days ago by ★ 4.3k • written 8 days ago by • 0
1
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6
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265
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DiffBind dba.count
updated 16 hours ago by ★ 4.3k • written 14 days ago by • 0
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1
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Input format for `combinations` in `hashedDrops`
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Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
You can have as many columns as you like in coldata, only those specified in the design will be used when you do the DESeq command So sur…
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Matthew • 0
Thanks for the suggestion, I'll give that a try! Based on the PCA, all three factors do tend to influence the results, so I'll try the colu…
Comment: fgsea not downloading due to new r version. Is there a way around this? by amir.khan • 0
Seems to have done the trick and worked. thanks!
Comment: Multi-factor paired RNAseq differential analysis with DEseq2 by Michael Love 35k
Just to underscore swbarnes2 advice above, I'd also recommend discussing statistical design with a local statistician or someone familiar w…
Answer: Multi-factor paired RNAseq differential analysis with DEseq2 by swbarnes2 ▴ 970
First, I'd start by looking at all your samples in PCA. Does sex have a strong effect? Does it make sense to compare one tissue with anot…
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Answer: fgsea not downloading due to new r version. Is there a way around this?
Comment: Unable to install Rhtslib in R-4.1.1
Answer: fgsea not downloading due to new r version. Is there a way around this?
Answer: Swish with more than two conditions. Add support for contrasts?
Answer: ERROR: unable to find an inherited method for function ‘dispersions<-’ for signa
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