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0
votes
2
answers
40
views
2
answers
Annotation to probes in mogene20sttranscriptcluster.db returns "NA"
microarray mogene20sttranscriptcluster.db written 15 hours ago by haroon.maximas • 0
0
votes
0
answers
25
views
0
answers
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 4 hours ago by siajunren • 0
2
votes
1
answer
91
views
1
answer
Identify up and down regulated genes in affymetrix data
microarray affy limma written 18 hours ago by j_jamal96 • 0 • updated 8 hours ago by Gordon Smyth ♦ 30k
0
votes
0
answers
49
views
0
answers
RNA sequencing analysis for time point experiment using DeSeq2
rnaseq deseq2 rna written 11 hours ago by hrishi27n • 0
0
votes
2
answers
35
views
2
answers
Creating Intensity GDS file for the R package GWAStools
gwastools idat gds format written 19 hours ago by catbriggsm • 0 • updated 14 hours ago by Stephanie M. Gogarten • 530
0
votes
1
answer
49
views
1
answer
PFAM enrichment analysis using Fishers.test
pfam written 17 hours ago by c • 0 • updated 15 hours ago by James W. MacDonald ♦ 43k
0
votes
1
answer
158
views
1
answer
Query regarding Prostar
prostar written 9 months ago by kamal.fartiyal84 • 0 • updated 16 hours ago by Laurent Gatto ♦ 820
0
votes
0
answers
52
views
0
answers
How construct a model for case-control time-course experiment in DEXseq?
timecourse dexseq model model.matrix written 18 hours ago by heikki.sarin • 0
0
votes
0
answers
30
views
0
answers
Pairwise comparison using DEXSeq and interpreting results
dexseq plotdexseq written 19 hours ago by llo • 0
1
vote
3
answers
65
views
3
answers
Sparsity plot and how that indicates a model fit to negative binomial distribution
deseq2 written 1 day ago by tg369 • 0
0
votes
0
answers
62
views
0
answers
Single Sample GSEA (ssGSEA) and dynamic range of expression
gsva piano ssgsea egsea written 2 days ago by sina.nassiri • 40
0
votes
1
answer
48
views
1
answer
ddCT Package for StepOnePlus qPCR output
geneexpression qpcr ddct written 1 day ago by rbronste • 0 • updated 21 hours ago by Zhang, Jitao David • 80
0
votes
2
answers
58
views
2
answers
Missing value imputation
msnbase written 1 day ago by kamal.fartiyal84 • 0
0
votes
1
answer
42
views
1
answer
Linear regression in DESeq2
deseq written 1 day ago by chimeric • 0 • updated 1 day ago by Michael Love ♦ 13k
4
votes
2
answers
51
views
2
answers
Designing a model matrix and further process?
annotation limma process R written 1 day ago by Biotechuos4 • 0
0
votes
2
answers
53
views
2
answers
Differences in PCA plot - rld versus vsd normalized data (DESeq2)
deseq2 batch effect pca written 1 day ago by pkachroo • 10 • updated 1 day ago by Michael Love ♦ 13k
0
votes
0
answers
45
views
0
answers
a possible bug in spia function
spia written 1 day ago by slava.ilyntskyy • 0
5
votes
2
answers
112
views
2
answers
Volcanoplot with limma - RAW P-values or Adj.P-Values
limma volcanoplot fdr written 3 days ago by thyagoleal • 20 • updated 1 day ago by Wolfgang Huber ♦ 13k
0
votes
1
answer
45
views
1
answer
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio written 1 day ago by yog312 • 0 • updated 1 day ago by Martin Morgan ♦♦ 20k
2
votes
5
answers
157
views
5
answers
Recent build and parsing error in pathview
kegggraph gage pathview pathway pathway analysis written 7 days ago by Luo Weijun • 1.4k
0
votes
1
answer
88
views
1
answer
edgeR DE gene calculation problem
edger written 1 day ago by jw24 • 0 • updated 1 day ago by Aaron Lun • 15k
4
votes
0
answers
48
views
0
answers
Tutorial: BoF "Writing papers in Rmarkdown, BiocStyle... (and books, posters)"
biocstyle tutorial rmarkdown written 1 day ago by Wolfgang Huber ♦ 13k
0
votes
0
answers
49
views
0
answers
DEXseq plot, determin the EU Fold change
dexseq plotdexseq written 1 day ago by layal8785 • 0
0
votes
1
answer
50
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 1 day ago by shawn.w.foley • 0 • updated 1 day ago by assaron • 100
0
votes
0
answers
38
views
0
answers
problem with cummeRbund using latest R version
cummerbund written 1 day ago by mmateos • 0
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