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0
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0
answers
4
views
0
answers
Error executing flowcore vignette
flowcore software error vignette written 13 minutes ago by Robert Baer • 70
0
votes
1
answer
24
views
1
answer
appointing a new maintainer for my package
bioconductor written 8 hours ago by christophbernau • 0 • updated 1 hour ago by Martin Morgan ♦♦ 20k
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votes
0
answers
16
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0
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manually import pwm into R to use in TFBSTools:::searchSeq()
tfbstools jaspar pwm written 9 hours ago by chrisclarkson100 • 30
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votes
1
answer
40
views
1
answer
How to plot Oncoplot with out sorting
maftools written 3 days ago by seeker • 0 • updated 11 hours ago by anand_mt • 60
1
vote
1
answer
36
views
1
answer
DESeq2 Design Formula for Time Series Experiment
deseq2 written 1 day ago by gkuffel • 10 • updated 16 hours ago by David Requena • 0
2
votes
1
answer
46
views
1
answer
Obtaining transcript names in RSEM
tximport rsem written 1 day ago by deena • 0 • updated 19 hours ago by Michael Love ♦ 13k
3
votes
2
answers
82
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2
answers
About the results and contrast (DESeq2)
deseq2 differential expression rna-seq written 4 days ago by David Requena • 0
10
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1
answer
1.5k
views
5 follow
1
answer
Bootstrap confidence intervals on RNA-seq expression from Kallisto
rnaseq limma edger deseq2 voom written 2.3 years ago by Sean Davis ♦ 20k • updated 22 hours ago by Paul Harrison • 60
0
votes
1
answer
26
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1
answer
R session crash with SGSeq::convertToTxFeatures
sgseq txdb crash maketxdbfrombiomart txfeatures written 1 day ago by oolongoni • 10 • updated 1 day ago by Leonard Goldstein • 20
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votes
1
answer
31
views
1
answer
Error downloading the package
download tcga tcgabiolinks written 1 day ago by sup230 • 10 • updated 1 day ago by James W. MacDonald ♦ 44k
1
vote
2
answers
39
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2
answers
Expression profile from $E from Voom
voom $elist written 1 day ago by anpham • 0 • updated 1 day ago by Steve Lianoglou ♦ 12k
0
votes
1
answer
26
views
1
answer
CNVPanelizer package error
cnvpanelizer failed to open bamfile failed to load bam index file written 1 day ago by sbpatel2009 • 0
0
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0
answers
24
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0
answers
Legend for Gviz annotation track?
gviz legend written 1 day ago by Silvia • 0
0
votes
1
answer
57
views
1
answer
Sample-to-sample distance matrix using heatmap.2
deseq2 heatmap.2 gplots written 3 days ago by Jane Merlevede • 90
2
votes
1
answer
34
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1
answer
problem with DESeq2 on metagenome analysis
deseq2 metagenome written 1 day ago by ghanbari.msc • 10 • updated 1 day ago by Michael Love ♦ 13k
0
votes
1
answer
66
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1
answer
DESeq2 biological replicates and RIN values
rnaseq deseq2 differential gene expression covariates written 3 days ago by pmoranlosada • 0 • updated 1 day ago by Michael Love ♦ 13k
0
votes
1
answer
33
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1
answer
[DESeq2] Slight difference between lfcMLE and my calculated log2 fold change
deseq2 written 1 day ago by Mike • 0 • updated 1 day ago by Michael Love ♦ 13k
1
vote
2
answers
71
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2
answers
How to add both row and column labels to Complexheatmap
complexheatmap labels written 2 days ago by dilawerkh4 • 0
0
votes
0
answers
32
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0
answers
Differential expression of nomalised and log2 transformed data in limma
limma differential gene expression lmfit model.matrix written 1 day ago by stinehedensted • 0
0
votes
3
answers
60
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3
answers
BSgenomeForge error in .TwoBits_export
bsgenome forge twobits_export written 3 days ago by stu111538 • 0 • updated 1 day ago by Hervé Pagès ♦♦ 12k
0
votes
1
answer
35
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1
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differentially expressed genes form RSEM genes data
rnaseq edger written 1 day ago by lily • 10 • updated 1 day ago by Gordon Smyth ♦ 31k
0
votes
1
answer
111
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1
answer
Resolved- GSEAbase: goSlim function, pb with counts
go gsea goslim written 9 days ago by maeva.mollion • 0
0
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1
answer
55
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1
answer
limma: Camera() about the input data
limma camera written 2 days ago by django_w • 0 • updated 1 day ago by Gordon Smyth ♦ 31k
0
votes
0
answers
47
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0
answers
Biomart ensembl annotation does not completely match my gene names
biomart ensemblbiomart written 1 day ago by spromanos • 0
1
vote
1
answer
58
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1
answer
Can I combine quants from SE and PE reads from replicates of same sample in Salmon Quasi-mapping mode?
salmon tximport limma-voom written 2 days ago by Sandip Darji • 0 • updated 1 day ago by Michael Love ♦ 13k
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