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scater error: invalid rownames length
scater written 6 hours ago by lileijie1992 • 0 • updated 7 minutes ago by Aaron Lun • 22k
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Looking for Expert Help for Avast Antivirus Update
software error written 5 hours ago by Jessicamorris • 0
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Job: Postdoctoral positions in drug discovery and genome data science
job computational biology big data biostatistics data science drug discovery written 8 hours ago by Thomas Girke • 1.7k
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Protein quantification by MSnbase package
msnbase rforproteomics written 11 hours ago by fsgolestan • 10
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Local versus parametric fitType in DESeq2 in this instance?
deseq2 rna-seq written 12 hours ago by rebeliscu • 0
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DiffBind for ATAC-seq -- bFullLibrarySize parameter
diffbind atac written 13 hours ago by paz2005 • 0
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Using up- and down-regulated genes in a signature with SigCheck
sigcheck written 21 hours ago by Lavorgna Giovanni • 80 • updated 20 hours ago by Rory Stark • 2.7k
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What is the "linear model" part used for in Limma?
limma R linear models written 1 day ago by christiangriffioen • 0 • updated 23 hours ago by Aaron Lun • 22k
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enrichplot packages - is there a way of dropping specific KEGG classes
clusterprofiler enrichkegg gsekegg enrichplot written 1 day ago by yurigorelik • 10
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error running sc3_plot_de_genes in SC3 R package
sc3 written 1 day ago by weiqiao1029 • 0 • updated 1 day ago by Vladimir Kiselev • 130
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[deseq2] normalization between samples after merging transcripts into genes
deseq2 tximport written 1 day ago by marie • 0 • updated 1 day ago by James W. MacDonald ♦ 49k
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News: BioC2019 talk/workshop/scholarship submission deadline MARCH 15
news bioc2019 written 1 day ago by Levi Waldron ♦ 840
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clusterProfiler GeneRatio minGSSize
enrichkegg generatio written 2 days ago by zhang.jianhai • 0
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation enmix bmiq written 7 days ago by moldach • 10
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Hill shape p-value histogram after differential miRNA expression analysis with DESeq2
mirna deseq2 fdrtool written 1 day ago by L_K • 0 • updated 1 day ago by Robert Castelo • 2.3k
2
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1
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37
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1
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Iterate through sever annotation database packages
annotation R written 1 day ago by Morgan Howard • 0 • updated 1 day ago by James W. MacDonald ♦ 49k
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244
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1
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DESeq2 w. pathway/network info as a prior knowledge
deseq2 pathway differential expression written 6 days ago by guidobarzaghi • 20 • updated 1 day ago by Michael Love ♦ 22k
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Normalized transcript/exon counts for network analysis
dexseq sva wgcna drimseq written 1 day ago by maya.kappil • 0
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24
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Diffbind multiple groups
diffbind written 1 day ago by Vince Schulz • 60
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39
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1
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Normalization large data set
normalization gcrma written 2 days ago by phungduongmy1416222 • 0 • updated 1 day ago by James W. MacDonald ♦ 49k
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Microarray Analysis of Sleep Deprivation Data Experimental Design
limma R gene expression diffeential expression microarray analysis written 2 days ago by bdighera • 0 • updated 1 day ago by James W. MacDonald ♦ 49k
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25
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Deseq2 padjusted values versus pvalue
rnaseq deseq2 padjusted written 1 day ago by tanyabioinfo • 20 • updated 1 day ago by Michael Love ♦ 22k
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94
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tximport question on the values contained in "counts" and "abundance" matrices
tximport written 20 days ago by HKS • 0 • updated 1 day ago by James W. MacDonald ♦ 49k
3
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1
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43
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clarification of time-series analysis
deseq2 lrt baseline written 1 day ago by Assa Yeroslaviz • 1.4k • updated 1 day ago by Michael Love ♦ 22k
2
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1
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66
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Time-series analysis with DESeq2
edger deseq2 design matrix time-series written 1 day ago by Assa Yeroslaviz • 1.4k • updated 1 day ago by Michael Love ♦ 22k
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