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0
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answers
4
views
0
answers
metagenomeSeq error question: error on creation of newMRexperiment
microbiome metagenomeseq metagenomeseq error written 39 minutes ago by slizo001 • 0
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answers
16
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answers
ChAMP Methylation analysis error code "could not find function champ.load"
champ written 2 hours ago by sinha.puja • 0
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0
answers
12
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answers
Tutorial: Data import with read.delim
limma rsubread tutorial written 4 hours ago by justinkablan225 • 0
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0
answers
27
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answers
Job: Postdoctoral Position: Bioinformatics/data science
job bioinformatics biostatistics data science written 1 day ago by l.tomalin1987 • 0
0
votes
1
answer
64
views
1
answer
Methylation data visualization using methyAnalysis with minfi
microarray minfi methyanalysis illumina methylation written 1 day ago by Adam_M • 0 • updated 1 day ago by Ou, Jianhong • 1.1k
0
votes
1
answer
36
views
1
answer
How to get popStats from wsp
flowworkspace written 1 day ago by vonskopnik • 10 • updated 1 day ago by Jiang, Mike • 1.2k
0
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answers
46
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answers
error during loading of minfi package
software error written 1 day ago by sinha.puja • 0
1
vote
1
answer
65
views
1
answer
Timecourse gene expression analysis with DESeq2
timecourse deseq2 multiple factor design lrt written 1 day ago by juditkovacsbio • 0 • updated 1 day ago by Michael Love ♦ 20k
0
votes
1
answer
119
views
1
answer
Add TRF in mouse BSgenome
tandem repeats bsgenome.mmusculus trf written 15 days ago by fusion.slope • 0 • updated 1 day ago by shepherl ♦♦ 890
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votes
1
answer
32
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1
answer
Question: Deconvolution Method in Seurat and convert from SingleCellExperiment
rnaseq scater seurat singlecellexperiment written 1 day ago by hamza_karakurt • 0 • updated 1 day ago by Aaron Lun • 21k
2
votes
1
answer
83
views
1
answer
Deseq normalization with adjusting gene length
normalization deseq2 written 2 days ago by Maryam • 0
1
vote
1
answer
42
views
1
answer
Help analyzing RNA-seq data from FPKM values with multiple time points
rnaseq limma written 1 day ago by rsrzkk • 0 • updated 1 day ago by Aaron Lun • 21k
0
votes
1
answer
57
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1
answer
from denove contig assembly to chromosome bins
gothic diffhic hic hic-c hicup written 1 day ago by mictadlo • 0 • updated 1 day ago by Aaron Lun • 21k
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1
answer
27
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1
answer
How to resolve these trendVar() warnings and errors
scran scater singlecellexperiment written 2 days ago by Abhishek Singh • 20 • updated 1 day ago by Aaron Lun • 21k
0
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0
answers
39
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Error in scanBam(bam_fn) : could not find function "scanBam"
gothic diffhic hic hic-c hicup written 9 days ago by mictadlo • 0
0
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0
answers
29
views
0
answers
Is S4Vectors not able to install in R-3.5.1?
s4vectors r-3.5.1 written 2 days ago by zhang303 • 0
1
vote
0
answers
18
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0
answers
geGeo error - Error in .subset2(x, i) : subscript out of bounds
geoquery written 2 days ago by yurigorelik • 10 • updated 2 days ago by James W. MacDonald ♦ 48k
0
votes
1
answer
40
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1
answer
Efficient counting of nucleotide changes in short-reads
biostrings genomicalignments written 2 days ago by Robert Castelo • 2.2k • updated 2 days ago by Michael Lawrence ♦ 10k
0
votes
1
answer
52
views
1
answer
Reverse Normalized RNA-seq readcounts/fpkm values to raw readcounts
normalization deseq2 rna-seq readcount reverse written 2 days ago by knholm • 0 • updated 2 days ago by Michael Love ♦ 20k
2
votes
1
answer
38
views
1
answer
Help with multi-factored RNA-seq edgeR model
rnaseq edger interaction model design model written 2 days ago by cody0071 • 0 • updated 2 days ago by James W. MacDonald ♦ 48k
0
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0
answers
23
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0
answers
topGO: "There are no adj nodes for node"
topgo software error org.hs.eg.db written 2 days ago by natske • 10
2
votes
1
answer
39
views
1
answer
Problem with extracting information about exons from TxDb.Hsapiens.UCSC.hg19.knownGene: incorrect number of exons and overlapping exons
granges ucsc txdb txdb.hsapiens.ucsc.hg19.knowngene exons written 2 days ago by olavur • 10 • updated 2 days ago by James W. MacDonald ♦ 48k
0
votes
0
answers
20
views
0
answers
biotmle package error with heatmap/dendrogram
biotmle written 2 days ago by detroit.drive • 0
0
votes
1
answer
40
views
1
answer
Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 2 days ago by chiara.facciotto • 0 • updated 2 days ago by Michael Love ♦ 20k
0
votes
1
answer
31
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1
answer
Linking PhosMap to issue number: 953
error github package contribution written 2 days ago by ecnuzdd • 0 • updated 2 days ago by Martin Morgan ♦♦ 22k
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