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0
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0
answers
24
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0
answers
facsDorit package: Error in file(filename, open = "rb") : cannot open the connection
facsdorit readcytoset written 20 hours ago by detroit.drive • 0
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1
answer
20
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1
answer
DESeq and checkFullRank(modelMatrix)
deseq2 rna written 10 hours ago by Merlin • 10 • updated 10 hours ago by Michael Love ♦ 22k
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1
answer
42
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1
answer
Missing clinical data at TCGAbiolinks data
tcgabiolinks days_to_death clinical data missing column written 2 days ago by Talip Zengin • 10 • updated 1 day ago by Tiago Chedraoui Silva • 170
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1
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70
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1
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Manually feed DESeq with dispersions
deseq2 written 1 day ago by ruhollah.mb • 0 • updated 1 day ago by Michael Love ♦ 22k
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38
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limma random effects and multi level experiments
limma multi-level random effect written 1 day ago by David Rengel • 70
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1
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40
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1
answer
diffHic ICE normalization PCA with NAs
normalization pca diffhic hi-c nas written 2 days ago by inzirio • 10 • updated 1 day ago by Aaron Lun • 23k
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21
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0
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seqCAT profiler filtering out all variants?
seqcat written 1 day ago by abe • 0
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1
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32
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1
answer
How to regress phenotype ~ gene + covars in limma?
microarray limma R gene expression written 1 day ago by anon20955 • 0 • updated 1 day ago by Gordon Smyth ♦ 37k
1
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1
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39
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1
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How do I creat an expressionset if there is no GDS listed on the GEO database?
microarray limma geoquery written 2 days ago by pgurkirat • 0 • updated 2 days ago by James W. MacDonald ♦ 49k
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19
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Error in FunciSNP
funcisnp written 2 days ago by francesca casalino • 50
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0
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75
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0
answers
Job: Bionformatician Position / Heidelberg
job data integration transcriptomics neuroscience written 23 days ago by slezak • 0
1
vote
1
answer
63
views
1
answer
DESeq2: How does the model of the trend function looks like?
deseq2 gamma-family dispersion trend written 2 days ago by Fischer-philipp • 20 • updated 2 days ago by Michael Love ♦ 22k
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1
answer
52
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1
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Three-factor design with DESeq2
deseq2 time-course written 2 days ago by h.valipour.k • 0 • updated 2 days ago by Michael Love ♦ 22k
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0
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45
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GDCdownload error on CentOS 6.10 server
tcgabiolinks written 2 days ago by t.kuilman ♦ 140
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1
answer
32
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1
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error in addIds
tximeta written 3 days ago by anna.sawicka • 0
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40
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Tutorial: How to download reference genomes using the RBioMart from ensembl?
alignment biomart tutorial downloading reference genome written 2 days ago by jcollidelcs • 0
3
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1
answer
54
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1
answer
subread gives segfaults when supplied with falsely-identified paired end reads
rsubread subread written 3 days ago by Jonathan Griffiths • 20 • updated 2 days ago by Gordon Smyth ♦ 37k
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0
answers
43
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Estimating sample size for specific platforms
software error R rna-seq rnaseqsamplesize written 2 days ago by jivarajivaraj • 10
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1
answer
46
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1
answer
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edger glm nested glmqlfit written 4 days ago by jcalis • 0 • updated 3 days ago by Aaron Lun • 23k
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1
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53
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1
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Installing DESeq2 on Google Cloud
deseq2 written 3 days ago by emilio • 0 • updated 3 days ago by James W. MacDonald ♦ 49k
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107
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FeatureCounts counts wrongly when quantifying mixed paired and unpaired reads
rsubread featurecounts written 3 days ago by k.vitting.seerup • 90
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36
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Error: row names supplied are of the wrong length in RUVSeq
edger ruvseq software error written 3 days ago by ce.jim.san • 0 • updated 3 days ago by Gordon Smyth ♦ 37k
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1
answer
25
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1
answer
DESEQ2 normalization vs Subsampling
deseq2 written 3 days ago by francois.maillard2 • 0 • updated 3 days ago by Michael Love ♦ 22k
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0
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13
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Parameter to best vector in VNS
#meigor written 3 days ago by jullianesantos1995 • 0
2
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56
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Improving the performance of the align function from Rsubread for old Roche454 reads
rnaseq rsubread align roche454 written 3 days ago by Raito92 • 30
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