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0
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0
answers
10
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0
answers
Need update access to package "banocc"
software error written 2 hours ago by george.weingart • 0
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1
answer
56
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1
answer
browseGenome with Shiny
rtracklayer shiny browsegenome written 5 days ago by vivek82 • 0 • updated 3 hours ago by Michael Lawrence ♦ 10k
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1
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13
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1
answer
Can not install MINFI in WinDow 10 correctly
minfi error: package ‘bumphunter’ could not be loaded written 6 hours ago by sunday2009 • 0 • updated 6 hours ago by James W. MacDonald ♦ 48k
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12
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Job: Postdoc in Population Genomics - UC Davis
sequencing job bioinformatics genomics evolution genome analysis written 6 hours ago by hschmidt • 0
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14
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Preparation of summarizedExperiment for dexSeq
genomicfeatures genomicranges dexseq genomicalignments written 8 hours ago by A • 0
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16
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News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub news ensembl gtf 2bit written 9 hours ago by shepherl ♦♦ 830
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0
answers
11
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0
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msmsTests, NA values in test.results output
proteomics fdr msmstests written 9 hours ago by laural710 • 0
0
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0
answers
10
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0
answers
Indexing large chromosomes (like wheat) bam files in Rsamtools
rsamtools medips qsea written 10 hours ago by saripalligautam86 • 10
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votes
1
answer
29
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1
answer
NCBI hg38 transcript annotation package GenomicFeatures
genomicfeatures written 23 hours ago by zoe.ward • 0 • updated 12 hours ago by James W. MacDonald ♦ 48k
2
votes
1
answer
50
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1
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Differential analysis of multiple samples with different time points
diffbind R atac-seq written 1 day ago by firas • 0 • updated 13 hours ago by Rory Stark • 2.5k
2
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0
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32
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problem for finding soft thresholding in WGCNA algorithm
wgcna abline function scale independence diagram written 15 hours ago by modarzi • 10
0
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answers
31
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ClusterProfiler: Input file from methylation data in GO Classification (groupGO)
clusterprofiler written 18 hours ago by WF • 0
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answers
31
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0
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Plotting Expression of Differential Transcripts following DEXSeq and StageR
dexseq dtu stager written 1 day ago by rbenel • 0
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1
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29
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1
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst written 1 day ago by cav3gh • 0 • updated 19 hours ago by zhengx • 20
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1
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29
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1
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Differential Expression of GSVA Enrichment Scores - pre-processing with voomWithQualityWeights and GSVA follow-up with lmfit
limma gsva lmfit voomwithqualityweights written 22 hours ago by seblatt • 0 • updated 20 hours ago by Robert Castelo • 2.2k
1
vote
1
answer
79
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1
answer
Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
deseq2 rna-seq written 1 day ago by hffqyd • 0
1
vote
1
answer
28
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1
answer
Recommendations for combining multiple 10x runs into one SingleCellExperiment
simplesinglecell singlecellexperiment dropletutils written 1 day ago by Peter Hickey • 380 • updated 23 hours ago by Aaron Lun • 21k
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27
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GOTHiC's GOTHiC's function fails with bwa input
gothic written 1 day ago by alongalor • 10
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answers
20
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How can I define which samples are controls and which samples are cases in ChAMP
champ champ.dmp cases controls references written 1 day ago by yuabrahamliu • 0
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1
answer
51
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1
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DESeq2 for large de novo transcripts assembly
deseq2 written 1 day ago by Emiliano Canton • 10 • updated 1 day ago by Michael Love ♦ 19k
3
votes
1
answer
70
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1
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Using deseq2 with batch effects and classification as downstream analysis
classification deseq2 batch effect written 2 days ago by Maryam • 0 • updated 1 day ago by Michael Love ♦ 19k
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0
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37
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cluster analysis in R
R written 1 day ago by morteza.hadizade • 10
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0
answers
34
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GenomicRanges based on indices or more conditions, and add column from match
iranges genomicranges findoverlaps written 1 day ago by francesca casalino • 50
1
vote
1
answer
57
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1
answer
Explanation of mroast results for specific biological processes and error with barcodeplot function with a microarray dataset
limma mroast barcodeplot agilent microarrays go.bp written 2 days ago by svlachavas • 610 • updated 2 days ago by Gordon Smyth ♦ 35k
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38
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Problem installing flipflop 1.18.0 due to error compiling align.cpp
flipflop written 2 days ago by hjshayya254 • 0
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