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0
votes
1
answer
17
views
1
answer
Global Trend Analysis using results from EdgeR
clustering edger consensusclusterplus differential gene expression kmeans written 4 hours ago by anupriya.dalmia • 0 • updated 2 minutes ago by Aaron Lun • 19k
2
votes
1
answer
67
views
1
answer
Low number of assigned reads using featureCounts / Strandedness issue
rnaseq rsubread featurecounts strandedness written 1 day ago by martin.weihrauch • 0
0
votes
0
answers
20
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0
answers
Differentially expressed genes detection between three classes with a batch effect in DESeq2
deseq2 differential gene expression batch effect written 5 hours ago by francesco.tabaro • 0
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0
answers
18
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0
answers
Results counts post DESeq same raw counts
deseq2 results written 4 hours ago by A • 0
0
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0
answers
24
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0
answers
Which one to pick if there are duplicate TCGA samples?
rnaseq R tcga tcgabiolinks gdc written 5 hours ago by Bioinfo • 60
0
votes
0
answers
12
views
0
answers
installing of BiomaRt package on windows 7
bioconductor written 6 hours ago by kepher.otieno98 • 0
0
votes
0
answers
16
views
0
answers
Absence of significant gene in DEG list
microarray limma written 7 hours ago by nia • 10
0
votes
1
answer
26
views
1
answer
How to arrive at an optimal value for attribute level in groupGO or enrichGO in clusterprofiler
clusterprofiler groupgo gene ontology level written 19 hours ago by saadmurtazakhan • 10 • updated 10 hours ago by Guangchuang Yu • 960
0
votes
0
answers
15
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0
answers
No CNAs or SNVs in results
purecn written 12 hours ago by twtoal • 0
0
votes
0
answers
22
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0
answers
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 17 hours ago by VSM • 120
0
votes
1
answer
39
views
1
answer
DESeq2 with multi level
deseq2 lfcshrink written 2 days ago by pierre.k • 0 • updated 17 hours ago by Michael Love ♦ 17k
0
votes
2
answers
36
views
2
answers
biomaRt getBM error
biomart written 1 day ago by array chip • 350
0
votes
0
answers
31
views
0
answers
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
chipseq diffbind counts bedtools peaks written 23 hours ago by Ni-Ar • 0
1
vote
2
answers
47
views
2
answers
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
deseq2 pca rlog transformation biotype written 1 day ago by JoannaF • 0
0
votes
0
answers
28
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0
answers
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
sequencing alignment rsamtools R mapping written 23 hours ago by nginet • 0
1
vote
1
answer
35
views
1
answer
DESEQ2 design with multiple conditions
deseq2 design matrix written 1 day ago by vrehaman • 0 • updated 1 day ago by Michael Love ♦ 17k
0
votes
1
answer
22
views
1
answer
Converting scater-normalized UMI data to Monocle CellDataSet
monocle scran scater umi written 1 day ago by supremerulersuraj • 0 • updated 1 day ago by Aaron Lun • 19k
0
votes
0
answers
20
views
0
answers
Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species written 1 day ago by monteiro • 0
1
vote
1
answer
51
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 1 day ago by Aurora • 10 • updated 1 day ago by Gordon Smyth ♦ 33k
1
vote
1
answer
63
views
1
answer
Subsetting Rle with ORF-sequence-positions by the 3 frames
rle big data coveragebytranscript written 5 days ago by hauken_heyken • 40
0
votes
0
answers
17
views
0
answers
R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mzr R mass spectrometry written 1 day ago by andreas.breidbach • 0
1
vote
2
answers
140
views
2
answers
Comparison between limma and edgeR of reads ratio
limma edger offset written 4 days ago by catpaw.tw • 0 • updated 1 day ago by Gordon Smyth ♦ 33k
1
vote
1
answer
30
views
1
answer
installation of "GenomicFeatures"
genomicfeatures written 1 day ago by krwyaong.ju • 0 • updated 1 day ago by James W. MacDonald ♦ 46k
1
vote
2
answers
146
views
2
answers
DEXSeq - dexseq_count.py issue
genomicfeatures dexseq dexseq_count written 7 weeks ago by marija.durdevic • 0 • updated 1 day ago by hazards • 0
2
votes
1
answer
44
views
1
answer
Interpretation of cngeneson when doing differential expression analysis in MAST
differential gene expression mast written 1 day ago by francesco.brundu@gmail.com • 40 • updated 1 day ago by Andrew_McDavid • 120
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