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1
vote
1
answer
23
views
1
answer
Goseq output with too many GO terms per category
go category goseq goterm written 11 hours ago by Juan • 0 • updated 9 hours ago by Gordon Smyth ♦ 34k
0
votes
0
answers
17
views
0
answers
How to download TCGA mutation data by TCGAbiolinks for a subset of barcode?
tcgabiolinks written 9 hours ago by Talip Zengin • 10
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votes
0
answers
20
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0
answers
Import Chain - Cannot Import Chain File
rtracklayer written 13 hours ago by kipperf • 0
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0
answers
20
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0
answers
Transcript biotypes for ncRNA in GRCh37 using biomaRt?
biomart grch37 ncrna transcripts biotype written 15 hours ago by sergio.martinezcuesta • 10
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votes
0
answers
11
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answers
ChipQC not loading files
diffbind chipqc written 15 hours ago by avp25 • 0
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votes
1
answer
26
views
1
answer
ZINB-WaVE + DESeq2 misses low-expressed, single-condition genes that look like they should be markers
deseq2 differential expression rna-seq single cell zinb-wave written 16 hours ago by rory.kirchner • 0 • updated 16 hours ago by Michael Love ♦ 19k
0
votes
1
answer
26
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1
answer
DMRseq smoothed values
dmrseq written 19 hours ago by swebb1 • 0 • updated 19 hours ago by keegan • 20
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votes
1
answer
38
views
1
answer
SampleNetwork in WGCNA
wgcna wgcna package written 7 days ago by 2323982403 • 10
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votes
0
answers
13
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0
answers
Scoring DNA motifs by conservation
genomicalignments sequence conservation written 21 hours ago by martin.busch • 0
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0
answers
20
views
0
answers
(Closed) Power calculation 2 ANOVA repeated measures
R written 21 hours ago by tg369 • 40
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votes
1
answer
37
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1
answer
annotationhub: data update
annotationhub written 1 day ago by Kasper Daniel Hansen ♦ 6.4k • updated 22 hours ago by shepherl ♦♦ 650
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votes
1
answer
54
views
1
answer
Using DESeq2 for T-cell receptor clonotypes
deseq2 immunology tcr clonotypes written 23 hours ago by jirkanov • 0 • updated 23 hours ago by Michael Love ♦ 19k
0
votes
0
answers
25
views
0
answers
rhdf5 error writing matrix in hdf5 file
rhdf5 written 1 day ago by wolfgang.biener • 0
0
votes
1
answer
22
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1
answer
Time Series Analysis
timecourse deseq2 written 1 day ago by CE • 10 • updated 1 day ago by Michael Love ♦ 19k
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votes
1
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58
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1
answer
DESeq2 multifactor design, interpreting interaction names
deseq2 interactions multifactorial design written 1 day ago by fargo • 0 • updated 1 day ago by Michael Love ♦ 19k
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votes
1
answer
32
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1
answer
GO.db: searching for "top" GO term for list of terms
go go.db written 1 day ago by thijmen.breeschoten • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
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votes
1
answer
33
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1
answer
DESeq2 with HTSeq DESeqDataSetFromHTSeqCount
deseq2 written 1 day ago by vincentpailler • 0 • updated 1 day ago by Michael Love ♦ 19k
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votes
1
answer
32
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1
answer
For multiple level variables, different results with or without subsetting
deseq2 written 1 day ago by Xianjun Dong • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
1
vote
1
answer
28
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1
answer
Trouble Installing Bioconductor Basic Packages
bioclite R linuxmint installation problem virtualbox written 1 day ago by tasnif.rahman • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
1
vote
1
answer
71
views
1
answer
Why is batch effect correction an option in SCAN.UPC normalization?
normalization scan.upc upc batch effect correction written 1 day ago by y.li.1 • 0 • updated 1 day ago by Stephen Piccolo • 520
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votes
2
answers
23
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2
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Seq Array converting VCF to GDS using seqVCF2GDS, unable to find file problems with vcf.fn
seqarray written 2 days ago by cav3gh • 0 • updated 1 day ago by Stephanie M. Gogarten • 560
0
votes
0
answers
22
views
0
answers
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
wgcna p-value weighted correlation network analysis written 2 days ago by modarzi • 10
2
votes
1
answer
42
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1
answer
Design Matrix with paired and independent samples plus RUVg Spike-in normalization
edger ruvseq design matrix paired samples written 1 day ago by ChrisM • 0 • updated 1 day ago by James W. MacDonald ♦ 47k
0
votes
1
answer
35
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1
answer
DESeq2: likelihood ratio test interpretation, multifactor
deseq2 lrt likelihood ratio test written 2 days ago by agdif • 0 • updated 1 day ago by Michael Love ♦ 19k
0
votes
1
answer
37
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1
answer
Changes in DESeq2 Version 1.20?
deseq2 written 2 days ago by hinkel2 • 0 • updated 1 day ago by Michael Love ♦ 19k
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