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4
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0
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Problem for downloading TCGA cancer data by TCGAbiolinks
tcga tcgabiolinks gdc written 51 minutes ago by modarzi • 10
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votes
1
answer
21
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1
answer
Input files for Affymetrix platform
affymetrix cel txt written 16 hours ago by pbachali • 20 • updated 9 hours ago by James W. MacDonald ♦ 52k
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0
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19
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answers
Differential Expression Analysis on a Subset Derived from a Previous Contrast in edgeR or DESeq2
edger deseq2 design matrix atac design formula written 12 hours ago by corinne_hutfilz • 0
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votes
0
answers
15
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0
answers
RSS for new packages unavailable?
rss written 13 hours ago by Malcolm Cook • 1.5k
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answers
17
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answers
difference between Combat correction and SVA correction
limma written 14 hours ago by Mr.F • 0
0
votes
1
answer
29
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1
answer
Question about using sorted cell bulk microarray data (ImmGen) as reference
scmap written 1 day ago by atakanekiz • 30
0
votes
2
answers
32
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2
answers
DESeq2 changing Rownames (Gene accession numbers)
deseq2 written 19 hours ago by JGibbons1 • 0
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votes
1
answer
26
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1
answer
DESeq2: downregulation of control sample
deseq2 written 20 hours ago by raven • 0 • updated 17 hours ago by Michael Love ♦ 26k
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answers
17
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0
answers
nucleR ERROR unable to find an inherited method for function peakDetection for signature
job error peaks nucleosome written 17 hours ago by anne.kannengiesser • 0
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votes
1
answer
25
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1
answer
Problem installing BSgenome packages with R 3.6.1
'bsgenome.hsapiens.ucsc.hg19' written 20 hours ago by montag • 0 • updated 19 hours ago by James W. MacDonald ♦ 52k
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0
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26
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EdgeR: Transforming coefficients before testing for differential expression
edger model.matrix contrasts circadian written 23 hours ago by ingerslev • 0
1
vote
1
answer
35
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1
answer
Collapse Technical Replicates and Group-specific condition effects, individuals nested within groups
rnaseq deseq2 model.matrix collapsetechnicalreplicates written 22 hours ago by rbenel • 0 • updated 22 hours ago by Michael Love ♦ 26k
1
vote
1
answer
32
views
1
answer
Convert Chromosome postions to hgnc_symbol using R
microarray written 1 day ago by joyk2a • 0 • updated 22 hours ago by Mike Smith • 4.0k
0
votes
1
answer
30
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1
answer
Install Bioconductor in R studio
R written 1 day ago by zeina.bourhane • 0 • updated 23 hours ago by Kevin Blighe • 390
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0
answers
31
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0
answers
Error while opening Mart with biomaRt package
biomart software error ensembl written 1 day ago by loicborcard01 • 0
0
votes
0
answers
34
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0
answers
CNV plot using cn.mops
cn.mops software error R cnv plot visualization written 1 day ago by ari • 0
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votes
0
answers
12
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0
answers
ExomeDepth package- error with "select.reference.set" function
cnv exomedepth written 1 day ago by Bouzid.a • 0
0
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4
answers
100
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4
answers
GUIDEseq Error using offTargetAnalysisOfPeakRegions
guideseq written 3 days ago by tomas.rodriguez • 10 • updated 1 day ago by Julie Zhu • 4.1k
0
votes
1
answer
61
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1
answer
How to control the text size for colAttributes in the annotation bar for dbaplot() or dba.plotHeatmap()
diffbind dbaplot() dba.plotheatmap() written 2 days ago by researcher • 0 • updated 1 day ago by James W. MacDonald ♦ 52k
0
votes
1
answer
49
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1
answer
3' microarray data using Affy - can't find cdf file, please help!
microarray cdf affy written 2 days ago by meganlloyd • 0 • updated 1 day ago by James W. MacDonald ♦ 52k
2
votes
1
answer
36
views
1
answer
tximeta error in fetching genome info
rnaseq tximeta written 1 day ago by MT • 0 • updated 1 day ago by Michael Love ♦ 26k
0
votes
0
answers
41
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0
answers
Mathematical operations in FCS file
flowcore flow cytometry written 1 day ago by chandra.swarnendu • 0
0
votes
2
answers
131
views
2
answers
Help with DESeq2 design matrix
deseq2 written 3 days ago by MGuny • 0 • updated 2 days ago by mona.alee101 • 0
0
votes
0
answers
51
views
0
answers
Case-control study using WGCNA
network wgcna rna-seq written 2 days ago by ag1805x • 20
0
votes
0
answers
44
views
0
answers
How to change the text size for the names of ColAttributes
chipseq diffbind colattributes cex written 23 days ago by researcher • 0
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