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0
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0
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13
views
Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2
pcaExplorer
2 hours ago
Eric Katagirya
• 0
0
votes
0
replies
16
views
normalization across different species for DESeq2 analysis
DESeq2
normalization
Normalization
acrossspecies
5 hours ago
piemmea
• 0
0
votes
1
reply
27
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
updated 5 hours ago by
Guido Hooiveld
★ 3.9k • written 6 hours ago by
Yveto
• 0
0
votes
0
replies
17
views
DEXSeq design formula for multiple variable
DEXSeq
6 hours ago
Sara
• 0
0
votes
1
reply
64
views
Gene set enrichment analysis
clusterProfiler
GeneSetEnrichment
updated 12 hours ago by
Guido Hooiveld
★ 3.9k • written 1 day ago by
aogunbaw
• 0
0
votes
1
reply
51
views
ChAMP installation issue
Cha
ChAMP
updated 9 hours ago by
shepherl
3.9k • written 17 hours ago by
e1271094
• 0
0
votes
0
replies
23
views
Anti-Human APCS Recombinant Antibody (Dezamizumab)
healthyFlowData
17 hours ago
Lupe
• 0
0
votes
0
replies
42
views
Batch effect correction: methylome data
sesame
BatchEffect
MethylationArray
1 day ago
Seungmin
• 0
0
votes
1
reply
98
views
Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
1 day ago • updated 1 hour ago
Matthew Thornton
▴ 350
0
votes
3
replies
7.8k
views
SingleR Label.Ont
SingleR
updated 2 days ago by
Denis
• 0 • written 8 months ago by
saeed.khalili
• 0
0
votes
0
replies
53
views
The 'Home' shows:An error has occurred. Check your logs or contact the app author for clarification.
Reports
2 days ago
315005358
• 0
0
votes
1
reply
85
views
error
Biobase
3 days ago
NATASHA
• 0
0
votes
1
reply
87
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 3 days ago by
ATpoint
★ 4.1k • written 3 days ago by
sajadahmad41454
• 0
1
vote
2
replies
193
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq
duplicateCorrelation
limma
voom
4 days ago • updated 3 days ago
Dylan.Sheerin
• 0
0
votes
0
replies
41
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
3 days ago
neilzhao
▴ 30
1
vote
0
replies
289
views
News:
Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 4 days ago
shepherl
3.9k
0
votes
1
reply
75
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 4 days ago by
ATpoint
★ 4.1k • written 4 days ago by
sajadahmad41454
• 0
3
votes
4
replies
479
views
Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
GenomAutomorphism
updated 5 days ago by
Mike Smith
★ 6.5k • written 8 days ago by
robersy
• 0
2
votes
7
replies
296
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
5 days ago • updated 2 days ago
sajadahmad41454
• 0
0
votes
0
replies
48
views
Treeio as.treedata function seq lenght error
treeio
5 days ago
nromerov
• 0
2
votes
2
replies
239
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
6 days ago • updated 13 hours ago
zzrammal
• 0
3
votes
10
replies
390
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
updated 3 days ago by
James W. MacDonald
65k • written 6 days ago by
Abbey
• 0
2
votes
1
reply
132
views
minfi latest update for EPIC V2 chip
minfi
minfiDataEPIC
updated 6 days ago by
James W. MacDonald
65k • written 6 days ago by
e1271094
• 0
0
votes
1
reply
83
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 6 days ago by
shepherl
3.9k • written 6 days ago by
cyril.dalmasso
• 0
0
votes
0
replies
65
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
6 days ago
Dinesh
• 0
3
votes
5
replies
242
views
Help with running egsea()
EGSEA
7 days ago • updated 5 days ago
Chris
▴ 10
3
votes
1
reply
122
views
How to save the DEXSeq results
DEXSeq
updated 7 days ago by
Michael Love
42k • written 7 days ago by
Sara
• 0
3
votes
4
replies
257
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 5 days ago by
Gordon Smyth
50k • written 7 days ago by
Chris
▴ 10
0
votes
3
replies
173
views
Couldn't connect to server while using "pathways"
graphite
updated 7 days ago by
Michael Love
42k • written 7 days ago by
fduguchunhui
• 0
1
vote
1
reply
116
views
Trim/Filter out-of-bounds GRanges
GenomicRanges
updated 7 days ago by
Michael Love
42k • written 7 days ago by
mat149
▴ 70
1
vote
1
reply
160
views
Handling multiple differential expression comparisons
DESeq2
updated 8 days ago by
Michael Love
42k • written 10 days ago by
Zainab
▴ 10
2
votes
2
replies
202
views
fgsea significant result
fgsea
8 days ago
Chris
▴ 10
0
votes
42
replies
3.0k
views
How to use bootRanges to bootstrap small RNA loci (nullranges package)
bootRanges
nullranges
updated 6 hours ago by
Michael Love
42k • written 15 months ago by
Poonam
• 0
0
votes
6
replies
258
views
Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 9 days ago by
swbarnes2
★ 1.4k • written 11 days ago by
arfranco
▴ 130
1
vote
2
replies
375
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 9 days ago by
Gordon Smyth
50k • written 10 days ago by
Kim
• 0
2
votes
3
replies
225
views
package goseq seems to be not available on the latest version of R
goseq
updated 7 days ago by
Gordon Smyth
50k • written 10 days ago by
Patrycja
▴ 20
2
votes
3
replies
224
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 8 days ago by
ATpoint
★ 4.1k • written 10 days ago by
Reza
• 0
0
votes
0
replies
105
views
dba.plotProfile() plotting and interpretation
DiffBind
10 days ago
Henry
▴ 10
0
votes
1
reply
157
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 10 days ago by
Gordon Smyth
50k • written 11 days ago by
z_bahari
• 0
0
votes
1
reply
141
views
Gene-by-sample covariates in limma
Metabolomics
limma
updated 10 days ago by
Gordon Smyth
50k • written 11 days ago by
c53aba27
• 0
4
votes
2
replies
599
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
11 days ago • updated 7 days ago
gene_bioconductor
▴ 10
0
votes
0
replies
85
views
flowStats for CyTOF
flowStats
11 days ago
tholmes
• 0
0
votes
2
replies
141
views
DESeq2 v1.35.0
DESeq2
updated 11 days ago by
Michael Love
42k • written 11 days ago by
Espresso
• 0
0
votes
0
replies
79
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
11 days ago
yvonneh
• 0
0
votes
0
replies
74
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
11 days ago
Ian D.
▴ 70
0
votes
1
reply
117
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 11 days ago by
4r-rtg
• 0
0
votes
4
replies
327
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 1 day ago by
Ziliang
• 0 • written 12 days ago by
Ian D.
▴ 70
0
votes
2
replies
190
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
11 days ago • updated 10 days ago
kcarey
• 0
0
votes
3
replies
195
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 11 days ago by
ATpoint
★ 4.1k • written 11 days ago by
james.zhang20
• 0
1
vote
3
replies
279
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 5 days ago by
ATpoint
★ 4.1k • written 12 days ago by
angelathuynh5
• 0
192 results • Page
1 of 4
Recent ...
Replies
Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
alex.pico
▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
by
bandconductor
• 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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