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0
votes
0
replies
617
views
About weight function for Agilent data
Normalization
Normalization
18.5 years ago
Nataliya Yeremenko
▴ 100
0
votes
0
replies
447
views
Info about GO package
GO
GO
14.8 years ago
michael watson IAH-C
★ 3.4k
0
votes
0
replies
592
views
comparing Limma output from 2 different pre-processing methods
Cancer
limma
Cancer
limma
14.5 years ago
Martha Behnke
▴ 100
0
votes
0
replies
1.0k
views
Probing specific protein amino acid position changes in R
r
8.4 years ago
debra.ragland
• 0
0
votes
0
replies
733
views
2 Courses*** R/Splus Advanced Programming : August 14-15 in Seattle ! by XLSolutions Corp
15.8 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
777
views
limma design and biolrep matrix, duplicateCorrelation
15.7 years ago
Glyn Bradley
▴ 40
0
votes
0
replies
530
views
annotaion in bioconductor
AnnBuilder
AnnBuilder
19.2 years ago
Colantuoni, Carlo NIH/NIMH
▴ 10
0
votes
0
replies
924
views
error with islandDepthPlot in chipseq
chipseq
error
9.5 years ago
wtimp0
▴ 10
2
votes
0
replies
1.1k
views
Quality Assessment of one color Agilent arrays?
limma
one colour
agilent microarrays
qualitycontrol
arrayqualitymetrics
7.5 years ago
Bouzid.a
▴ 20
0
votes
0
replies
154
views
To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
7 weeks ago
Henry
• 0
0
votes
0
replies
609
views
How to get mapping from probe_id to probeset_id in Mouse Exon Array?
oligo
oligo
14.4 years ago
Peng Yu
▴ 940
0
votes
0
replies
461
views
How to see all data from getPopStats()?
bioconductor
6.8 years ago
justinyi10
▴ 10
0
votes
0
replies
518
views
help on proceeding strategy
Normalization
Normalization
18.6 years ago
Marco Gentilini
▴ 40
1
vote
1
reply
517
views
Gviz and AnnotateTrack and memory usage
annotation
4.9 years ago
rejpl
▴ 10
0
votes
0
replies
716
views
biomaRt has encountered an unknown server error
biomaRt
22 months ago
Grace_H
• 0
0
votes
0
replies
758
views
Problems with installning a package built with AnnBuilder
Annotation
Organism
Annotation
Organism
19.5 years ago
Johan Lindberg
▴ 270
0
votes
0
replies
668
views
Arithmetic Operations Between GRanges' Scores
GenomicRanges
2.9 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
618
views
problem read.maimage("Agilent") -limma
Annotation
limma
Annotation
limma
18.8 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
622
views
Subread2.0.3 featureCounts segmentation fault when loading gtf file
Subread
GTF
featureCounts
segmentationfault
14 months ago
yao hua
• 0
0
votes
0
replies
591
views
intraspotcorrelation() in individual channel analysis
limma
limma
14.9 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
504
views
Get gene expression data by averaging probes corresponding to the gene?
Microarray
probe
limma
convert
Microarray
probe
limma
convert
14.1 years ago
Gordon Smyth
50k
0
votes
0
replies
1.2k
views
overlay in GVIZ
Gviz
Gviz
10.6 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
892
views
beadarray - combining swath files
beadarray
beadarray
11.2 years ago
Sunitha M
▴ 20
0
votes
0
replies
559
views
rsbml: use local installation of SOSlib
installation problem
5.4 years ago
machne
• 0
0
votes
0
replies
525
views
how to install from file (whithout net access) ?
10.6 years ago
Jean-Christophe Penalva
▴ 10
0
votes
0
replies
209
views
SAGx
16.9 years ago
Pi Broberg
▴ 10
0
votes
0
replies
978
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
6.8 years ago
salamandra
▴ 20
0
votes
0
replies
701
views
About a problem with databases
Cancer
Cancer
16.2 years ago
JUAN MIGUEL MARIN DIAZARAQUE
▴ 70
0
votes
0
replies
683
views
problem reading genepix files using both marray andlimmafunctions
limma
limma
19.7 years ago
Bela Tiwari
▴ 60
0
votes
0
replies
1.1k
views
readQpcrBatch function in qpcrNorm
qpcrNorm
ReadqPCR
qpcrNorm
ReadqPCR
11.7 years ago
Mueller, Alan
▴ 20
0
votes
0
replies
814
views
two questions about limma
Microarray
limma
Microarray
limma
17.2 years ago
Gordon Smyth
50k
0
votes
0
replies
734
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq
Wald test
Beta regression
5.3 years ago
mira
• 0
0
votes
0
replies
812
views
problem with lumiR.batch log2 transformation
probe
probe
12.6 years ago
Briggs, Chris
▴ 20
0
votes
0
replies
829
views
Combining data from scans at different intensities
limma
aroma.light
limma
aroma.light
17.2 years ago
Gordon Smyth
50k
0
votes
0
replies
669
views
Annotate Package: How do I get the gene names and how do I write my matrix
Microarray
Annotation
Cancer
annaffy
convert
Microarray
Annotation
Cancer
annaffy
convert
19.7 years ago
James W. MacDonald
65k
0
votes
0
replies
858
views
Error with Reportingtools using ENSEMBL gene ID
reporting tools
modifyDF
survival
7.9 years ago
cagenet34
▴ 20
0
votes
0
replies
716
views
Paired DE analysis in edgeR with trios of samples while blocking for various confounders
edger
rnaseq
paired analysis
design matrix
5.1 years ago
svlachavas
▴ 830
0
votes
0
replies
764
views
Bioconductor: Ambiguous Amino Acids & Gap Sequences
Translation
Biostrings
2.7 years ago
emmanuel.verde2939
• 0
0
votes
0
replies
1.2k
views
subseq with iranges on reverse strand
Cancer
BSgenome
BSgenome
IRanges
Cancer
BSgenome
BSgenome
IRanges
9.7 years ago
Hervé Pagès
16k
0
votes
0
replies
768
views
problem installing the package on Red Hat 7.3
21.6 years ago
Steffen Durinck
▴ 30
0
votes
0
replies
290
views
samr question
16.3 years ago
yoo hoo
▴ 60
0
votes
0
replies
781
views
how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
7.0 years ago
sudhirjadhao2009
• 0
0
votes
0
replies
792
views
HTqPCR with multiple samples in multiple cards
HTqPCR
HTqPCR
11.5 years ago
Ferran Briansó
▴ 10
0
votes
0
replies
442
views
Using MBD score in MBD-seq
mbd-seq
MethylSeq
14 months ago
Marianna
▴ 20
0
votes
1
reply
702
views
pmapToTranscripts for alternative isoforms
GenomicFeatures
updated 3.2 years ago by
hauken_heyken
▴ 80 • written 3.6 years ago by
lvclark
▴ 10
0
votes
0
replies
770
views
Extracting PROBE_ID from lumiBatch
Annotation
probe
convert
Annotation
probe
convert
12.4 years ago
Pan Du
▴ 440
0
votes
0
replies
705
views
Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 6-10, 2012)
11.5 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
596
views
BioC2011 - lab sign up
12.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
815
views
Note in check report was: [Bioc-devel] Recent changes in R
Cancer
annotate
genefilter
siggenes
Cancer
annotate
genefilter
siggenes
17.0 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
625
views
Fw: missing doc. pages <<--- neglect this. Sorry
21.3 years ago
Sek Won Kong, M.D.
▴ 40
1,000 results • Page
1 of 20
Recent ...
Replies
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0
by
James W. MacDonald
65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
fatinataly
• 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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