0
votes
0
replies
318
views
'ZygosityPredictor's dependency 'datastructures' missing in R 4.3.0
ZygosityPredictor
updated 12 months ago by ★ 3.9k • written 12 months ago by • 0
0
votes
2
replies
607
views
msa Installation failed - please help
Install msa
12 months ago Ido • 0
0
votes
0
replies
385
views
Illumina global SNP screeing array
illuminaHumanv3.db arrays
11 months ago DH • 0
1
vote
0
replies
587
views
Fold values in Diffbind
DiffBind
11 months ago bhandary.8590 ▴ 20
0
votes
0
replies
439
views
blockwiseConsensusModules won't save individualTOM data?
blockwiseconsensusModules WGCNA consensus
11 months ago Levi • 0
0
votes
1
reply
810
views
SingleR error with multiple references
SingleR
updated 11 months ago by • 0 • written 18 months ago by • 0
0
votes
0
replies
302
views
Subsite info is possible for more studies
curatedMetagenomicData
11 months ago Vitor Heidrich • 0
0
votes
0
replies
409
views
Error while performing DEXseq
DEXSeq
11 months ago vipul14 • 0
0
votes
0
replies
866
views
fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff clusterProfiler fgsea
11 months ago pg45863 ▴ 10
2
votes
4
replies
621
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
11 months ago Michael Steinbaugh ▴ 90
0
votes
0
replies
418
views
Title in dba.plotProfile
DiffBind
11 months ago agata17 • 0
2
votes
1
reply
525
views
WGCNA: many over and under-expressed features in modules of a signed network
WGCNA wgcna_package
updated 11 months ago by ▴ 50 • written 11 months ago by ▴ 10
0
votes
0
replies
277
views
alpha1 in SAFFRON method in onlineFDR package
onlineFDR
11 months ago lgomeso • 0
1
vote
2
replies
821
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by ★ 6.5k • written 11 months ago by • 0
1
vote
4
replies
768
views
Submitting BSgenome package for a new assembly
bsgenome GenomicFeatures package
updated 11 months ago by 16k • written 11 months ago by • 0
0
votes
0
replies
446
views
Positive beta-scores of essential genes in drug-treated cells
mageck MAGeCKFlute CrisprScreen
11 months ago Monika • 0
0
votes
0
replies
403
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
11 months ago RuBBiT0 ▴ 10
0
votes
2
replies
542
views
No compilation on Windows y compilation on linux
Devel PackageType deve
12 months ago • updated 11 months ago Franck RICHARD • 0
1
vote
0
replies
490
views
WGCNA of two different cohorts study
DifferentialExpression WGCNA
updated 11 months ago by 42k • written 11 months ago by ▴ 20
0
votes
0
replies
423
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
11 months ago Abrianna • 0
0
votes
0
replies
629
views
MAGECK MLE design matrix
mageck MAGeCKFlute
11 months ago Monika • 0
0
votes
0
replies
399
views
Recommendation sought for differential exon usage of a single gene
isofor DEXSeq DifferentialSplicing
11 months ago nick_brittain55 • 0
0
votes
0
replies
549
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
11 months ago Yijing • 0
0
votes
2
replies
1.7k
views
ChAMP pipeline error (champ.import)
software error
written 5.1 years ago by • 0
0
votes
2
replies
512
views
Recount3: PCR duplicates
pcrduplicates recount3 multimappingreads
updated 11 months ago by • 0 • written 11 months ago by • 0
0
votes
1
reply
578
views
Recount3 data correspond to TCGA data
recount3
updated 11 months ago by • 0 • written 13 months ago by • 0
0
votes
1
reply
452
views
Error with IsoformSwitchAnalyzer: analyzePFAM
IsoformSwitchAnalyzeR
11 months ago Callum • 0
0
votes
1
reply
454
views
HiCDCPlus glm.fit error
HiCDCPlus
updated 11 months ago by • 0 • written 11 months ago by • 0
0
votes
1
reply
464
views
HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 11 months ago by • 0 • written 17 months ago by • 0
0
votes
1
reply
413
views
HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
HiCDCPlus
updated 11 months ago by • 0 • written 13 months ago by • 0
0
votes
1
reply
805
views
Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus BSgenome.Hsapiens.UCSC.hg38
updated 11 months ago by • 0 • written 17 months ago by • 0
0
votes
1
reply
463
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
11 months ago Esraa • 0
0
votes
0
replies
454
views
Issues setting background in STRINGdb
STRINGdb MSstats
11 months ago samsiljee • 0
0
votes
0
replies
445
views
Help with error running DiffBind
DiffBind
11 months ago Chris ▴ 10
0
votes
0
replies
249
views
Can I plot values from LINCS level 4?
cmapR
11 months ago Alexandre • 0
0
votes
0
replies
284
views
Gene names not included on KEGGgraph plots
KEGGgraph
11 months ago hilarius_bookbinder • 0
1
vote
4
replies
1.1k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview KEGG Oryza_sativa
11 months ago Jiyoung Lee • 0
0
votes
1
reply
532
views
Gene enrichment analysis
analysis R GOfuncR
updated 11 months ago by ▴ 730 • written 11 months ago by • 0
0
votes
0
replies
1.8k
views
what is the difference between iBAQ or LFQ?
Proteomics DEP limma
written 2.8 years ago by • 0
0
votes
6
replies
854
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago simone.tiberi • 0
0
votes
1
reply
641
views
affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 10 months ago by ★ 3.9k • written 10 months ago by 6.7k
0
votes
6
replies
726
views
fastMNN reproducibility across machines when using Docker
batchelor
10 months ago nils.eling • 0
0
votes
0
replies
355
views
Csaw - WindowCount : Paired reads unexpectedly filtered out
windowCount csaw paired
10 months ago julie.chevalier • 0
0
votes
0
replies
403
views
How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData BatchEffect sva
10 months ago amnahsiddiqa ▴ 10
1
vote
5
replies
883
views
DEXSeq output included non-exist exons
DEXSeq exon_definition exon
updated 10 months ago by ★ 1.9k • written 10 months ago by • 0
0
votes
0
replies
509
views
Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2 modelmatrix covariates
10 months ago amir • 0
0
votes
0
replies
11
views
Spam: win rar password recovery software
ExonArray splots hgu133a2.db
10 months ago roma 0
0
votes
0
replies
13
views
Spam: ost to pst migration software
mgu74bv2cdf NewWave hgu133a2.db
10 months ago roma 0
0
votes
0
replies
13
views
Spam: 7z password remover tool
mgu74bv2cdf NewWave hgu133a2.db
10 months ago roma 0
0
votes
0
replies
261
views
BIOMedical datasets
DATASETSINBIOMEDICINERECURRENTDATA MMAPPR2
10 months ago amchakaipa • 0
401 results • Page 1 of 9
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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