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News:
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Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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Maria Doyle
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written 2.8 years ago by
Maria Doyle
▴ 110
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402
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4.2k
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223
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News:
Ensembl 115 has been released!
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▴ 10
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156
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Course: Single-cell analysis with R/Bioconductor
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3 months ago
Ludwig Geistlinger
▴ 70
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Bioconductor
5 months ago
Wei Shi
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News:
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EuroBioC2024
written 22 months ago by
Maria Doyle
▴ 110
2
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876
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News:
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8 months ago
shepherl
4.2k
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351
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News:
Introduction to Epigenomics data analysis with R and Bioconductor course (online) - 14th-18th April
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8 months ago
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List of Deprecated Packages for Bioc3.20
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14 months ago • updated 8 months ago
shepherl
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451
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8 months ago
shepherl
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571
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8 months ago
shepherl
4.2k
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358
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GSEA in R/Bioconductor course
GSEABenchmarkeR
pairedGSEA
GeneSetEnrichment
9 months ago
info
▴ 10
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557
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News:
EuroBioC2025: Abstract Submissions Open!
EuroBioC2025
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Bioconductor
9 months ago
Maria Doyle
▴ 110
0
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1
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806
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Gene Set Enrichment Analysis in Bioconductor course
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9 months ago
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News:
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10 months ago
Maria Doyle
▴ 110
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385
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News:
Mass Spectrometry and Proteomics with R/Bioconductor course
cadd.v1.6.hg38
10 months ago
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▴ 10
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293
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News:
Announcing the GBCC2025 Logo Design Winner!
Community
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GBCC2025
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10 months ago
Maria Doyle
▴ 110
1
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10 months ago
Maria Doyle
▴ 110
0
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0
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516
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News:
Online course: Gene set enrichment analysis in R/Bioconductor
GSEABenchmarkeR
11 months ago
info
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4
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2.3k
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News:
EuroBioC2023 abstract submission closing soon!
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EuroBioc2023
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written 2.7 years ago by
Maria Doyle
▴ 110
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9
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updated 12 months ago by
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4.2k • written 12 months ago by
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News:
Bioconductor 3.20 is Released!
Bioconductor
Release
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13 months ago
shepherl
4.2k
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0
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429
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News:
RNAseq data analysis with R/Bioconductor (4-15 November)
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13 months ago
info
▴ 10
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568
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News:
Announcing the GBCC2025 Logo Design Contest!
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Galaxy
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13 months ago
Maria Doyle
▴ 110
0
votes
11
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2.6k
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News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
21 months ago • updated 14 months ago
shepherl
4.2k
0
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0
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982
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News:
Ensembl 113 has been released
ensembl
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biomaRt
14 months ago
Ensembl_Jorge
▴ 10
3
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4
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2.8k
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News:
Bioconductor 3.20 Release Schedule
software
release
Release
updated 7 months ago by
randyprice13102000
• 0 • written 15 months ago by
shepherl
4.2k
0
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0
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577
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News:
Single-cell RNA-seq analysis with R/Bioconductor (online course)
SingleCellExperiment
SingleCell
14 months ago
info
▴ 10
0
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0
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614
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News:
RNAseq data analysis with Bioconductor (online course)
DESeq2
SummarizedExperiment
14 months ago • updated 13 months ago
info
▴ 10
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1
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875
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News:
Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics
xcms
updated 14 months ago by
Harry
• 0 • written 14 months ago by
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News:
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Carpentries
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14 months ago
Maria Doyle
▴ 110
0
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716
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News:
Metabolomics with R/Bioconductor Online Course
metabomxtr
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Metabolomics
15 months ago
info
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2
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News:
Save the Date for EuroBioC2025 in Barcelona!
EuroBioC2025
Conference
Bioconductor
Community
15 months ago
Maria Doyle
▴ 110
0
votes
4
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2.2k
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News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
updated 8 weeks ago by
dzv20413
• 0 • written 15 months ago by
Maria Doyle
▴ 110
0
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779
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News:
BioCAsia 2024 Registration Now Open!
BioCAsia2024
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15 months ago
Maria Doyle
▴ 110
0
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737
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News:
EuroBioC Updates: Important Deadlines
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EuroBioC2024
Bioconductor
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EuroBioC
16 months ago
Maria Doyle
▴ 110
552 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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