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Answer: Confirm that OpenStats will not be archived (pryr dependency)
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As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
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Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…
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it looks above like you have a gene with two non-zero count samples.
Also, yes you can use a stricter filter. You cannot estimate the LFC …
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Thank you very much for your answer.
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```r
keep <- rowSums(counts(dds) >= 10) >= 3
dds <- dds[keep, …
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