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Course: Single-cell analysis with R/Bioconductor
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Bioconductor
5 months ago
Wei Shi
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News:
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13 months ago • updated 8 months ago
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GSEA in R/Bioconductor course
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9 months ago
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542
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9 months ago
Maria Doyle
▴ 110
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Gene Set Enrichment Analysis in Bioconductor course
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9 months ago
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9 months ago
Maria Doyle
▴ 110
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Mass Spectrometry and Proteomics with R/Bioconductor course
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10 months ago
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10 months ago
Maria Doyle
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10 months ago
Maria Doyle
▴ 110
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503
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10 months ago
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News:
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Maria Doyle
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13 months ago
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4.2k
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422
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13 months ago
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13 months ago
Maria Doyle
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ExperimentData
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21 months ago • updated 13 months ago
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4.2k
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966
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News:
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13 months ago
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News:
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Release
updated 7 months ago by
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• 0 • written 15 months ago by
shepherl
4.2k
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570
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News:
Single-cell RNA-seq analysis with R/Bioconductor (online course)
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14 months ago
info
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News:
RNAseq data analysis with Bioconductor (online course)
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14 months ago • updated 13 months ago
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News:
Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
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updated 14 months ago by
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14 months ago
Maria Doyle
▴ 110
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707
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News:
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15 months ago
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News:
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EuroBioC2025
Conference
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15 months ago
Maria Doyle
▴ 110
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News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
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updated 7 weeks ago by
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• 0 • written 15 months ago by
Maria Doyle
▴ 110
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770
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News:
BioCAsia 2024 Registration Now Open!
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15 months ago
Maria Doyle
▴ 110
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722
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News:
EuroBioC Updates: Important Deadlines
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15 months ago
Maria Doyle
▴ 110
552 results • Page
1 of 12
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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