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shepherl
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3.4 years ago
shepherl
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3.5 years ago
shepherl
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shepherl
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3.5 years ago
shepherl
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News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
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DiffBind
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updated 24 months ago by
Junsik
• 0 • written 3.5 years ago by
Rory Stark
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858
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3.6 years ago
shepherl
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930
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Bioconductor
Bioc2021
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3.6 years ago
shepherl
4.1k
1
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890
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Bioconductor Award for Outstanding Documentation
Bioc2021
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Bioconductor
3.6 years ago
shepherl
4.1k
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992
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3.6 years ago
kayla.interdonato
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Final List of Deprecated Packages for Bioc3.13
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4.0 years ago • updated 3.6 years ago
shepherl
4.1k
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952
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community
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3.6 years ago
Charlotte Soneson
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Ensembl 104 has just been released!
ensembldb
biomaRt
3.6 years ago
mchakiachvili
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3.6 years ago
shepherl
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shepherl
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shepherl
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3.6 years ago
shepherl
4.1k
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961
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3.6 years ago
shepherl
4.1k
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0
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915
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3.6 years ago
shepherl
4.1k
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1.1k
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shepherl
4.1k
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960
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shepherl
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728
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3.7 years ago
shepherl
4.1k
2
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bioconductoroversight
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BiocVersion
3.7 years ago
Matthew Ritchie
▴ 1000
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SBGNview manuscript on bioRxiv now
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SBGNview
Reactome
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written 3.7 years ago by
Luo Weijun
★ 1.6k
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updated 3.7 years ago by
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★ 1.1k • written 3.8 years ago by
shepherl
4.1k
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SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview
pathways
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3.8 years ago • updated 3.7 years ago
Luo Weijun
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• 0 • written 3.9 years ago by
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896
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3.8 years ago
Levi Waldron
★ 1.1k
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2
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1.6k
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Ensembl 103 has been released
biomaRt
ensembldb
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3.8 years ago • updated 3.6 years ago
mchakiachvili
▴ 20
3
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3
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▴ 760 • written 3.8 years ago by
Laurent Gatto
1.6k
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3.8 years ago
Matthew Ritchie
▴ 1000
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1.2k
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written 4.5 years ago by
shepherl
4.1k
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Proteome
4.0 years ago
info
▴ 10
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News:
Ensembl 102 has been released
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4.0 years ago
mchakiachvili
▴ 20
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871
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News:
BioC2021 organizing committee
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S4Vectors
4.1 years ago
Levi Waldron
★ 1.1k
3
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3
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talk
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kevin.rue
▴ 350
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News:
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Normalization
ATACSeq
ChIPSeq
DiffBind
chipseq
written 4.1 years ago by
Rory Stark
★ 5.2k
4
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0
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1.1k
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News:
Bioconductor 3.12 is Released!
Software
release
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4.1 years ago
shepherl
4.1k
10
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1.1k
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SUPPORT SITE UPGRADE COMPLETE
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updated 4.1 years ago by
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★ 13k • written 4.1 years ago by
shepherl
4.1k
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4.1 years ago
shepherl
4.1k
1
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
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deprecated
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4.2 years ago • updated 4.1 years ago
shepherl
4.1k
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0
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886
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
News
4.1 years ago
egon.willighagen
▴ 10
0
votes
1
reply
1.1k
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News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
annotation
db0
news
release
News
4.1 years ago
kayla.interdonato
▴ 160
1
vote
0
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1.2k
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News:
Project-wide Code of Conduct statement for Bioconductor
Coc
code
conduct
Bioconductor
News
4.2 years ago
Laurent Gatto
1.6k
3
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0
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1.7k
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News:
List of Deprecated Packages for Bioc3.12
annotation
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deprecated
News
4.3 years ago • updated 4.2 years ago
shepherl
4.1k
1
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0
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1.2k
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News:
New Package Submission Deadline for Bioc Release 3.12
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4.2 years ago
shepherl
4.1k
0
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0
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1.2k
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News:
Bioconductor Release 3.12 Schedule Posted
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News
4.2 years ago
shepherl
4.1k
4
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2
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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4.3 years ago
Johannes Rainer
★ 2.1k
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Dubaievisa.online provides Dubai e visa service, you can apply Dubai visa online at https://www.dubaievisa.online
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
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IIRC loading ~million cells into memory took about 3-5 minutes, but that was with a rather slow filesystem (HDD on a HPC), so YMMV dependin…
Comment: Differential Expression Genes as Independent Variables
by
Gordon Smyth
52k
Does not allow mixed models. And is for a different purpose to what your aims seem to be: it's purely for prediction rather than for testin…
Comment: Differential Expression Genes as Independent Variables
by
abadgerw
• 0
Thanks! I was thinking about this but do not believe glmnet allows for regularized mixed models unless I am mistaken?
Comment: lfcShrink and alpha value
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cropero
• 0
Thank you for your fast answer, I have everything clear now
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