3
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407
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Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
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Using Granges to find overlapping pairs at exactly 10kb distance
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6 weeks ago gshweta95 • 0
2
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216
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Only positive enrichment score in GSEA
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updated 6 weeks ago by ★ 3.9k • written 6 weeks ago by ▴ 10
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117
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Can i retrieve domain information from PANTHER ID's using PANTHER.db ?
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cBioPortalData loads empty z-score expression table
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crlmm: CDF for Infinium Global Diversity Array By Illumina
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6 weeks ago samuel.channon • 0
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Extracting genomic sequences using agat and bedtools yields different results
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updated 6 weeks ago by ★ 4.1k • written 7 weeks ago by • 0
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DNAcopy segment function not reproducible even when setting seed
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7 weeks ago BID • 0
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Help with identifying genes mapped to KEGG pathway using pathview
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Rsubread: buildindex() should support multiple reference files
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TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
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Exact same results in Diffbind with different normalization methods
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8 weeks ago • updated 7 weeks ago red_bricks ▴ 50
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FELLA plotGraph function won't change the legend
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224
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Rcpp compilation error
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updated 8 weeks ago by ★ 4.1k • written 8 weeks ago by ▴ 40
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Rain error: invalid annotation of time points
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9 weeks ago danalvoronov ▴ 10
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9 weeks ago Gordon • 0
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10 weeks ago thomas.heigl.ibk • 0
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254
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How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
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StringDB: Cannot finish their tutorial because of an error
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updated 10 weeks ago by 3.9k • written 10 weeks ago by • 0
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10 weeks ago Dillon • 0
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updated 10 weeks ago by 3.9k • written 10 weeks ago by • 0
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problems updating package
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10 weeks ago michael.shapiro • 0
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218
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how to solve this error?
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264
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11 weeks ago Olena • 0
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11 weeks ago mat149 ▴ 70
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GDC slides download
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394 results • Page 2 of 8
Recent ...
Replies
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
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