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0
votes
0
replies
774
views
limma linear model [was: (no subject)]
Regression
Regression
19.5 years ago
Gordon Smyth
50k
0
votes
0
replies
551
views
HTqPCR problem with creation of qPCRset
10.8 years ago
Brian Caffrey
▴ 10
0
votes
0
replies
677
views
DMRforPairs statistical testing framework is invalid for >2 samples?
DMRforPairs
7.0 years ago
gabriel.rosser
▴ 20
1
vote
5
replies
3.8k
views
how to get normalized count data from edgeR using TMM methods
edger
normalization
4.7 years ago
15958021290
▴ 10
0
votes
0
replies
852
views
JoVE: New Video Articles on Biomedical Research Techniques
zebrafish
zebrafish
15.0 years ago
Moshe Pritsker, Editor, JoVE
▴ 20
0
votes
0
replies
561
views
LIMMA - Intensity normalization methods
15.9 years ago
ninoochka@free.fr
▴ 10
0
votes
0
replies
569
views
problem with makeFeatureDbFromUCSC and snp135Common track
12.0 years ago
Tim Triche
★ 4.2k
0
votes
0
replies
1.0k
views
GenomicFeatures::makeTranscriptDbFromBiomart - Error in callSuper(...) : could not find function "initRefFields"
biomaRt
biomaRt
12.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
702
views
Parallel version of viewApply?
viewApply
biocparallel
7.0 years ago
maltethodberg
▴ 170
0
votes
0
replies
884
views
aCGH package. Plots: X axis label problems
aCGH
Cancer
aCGH
aCGH
Cancer
aCGH
11.9 years ago
Sarah JugurnauthLittle
▴ 20
0
votes
0
replies
993
views
diffbind question : bSubControl with DEseq
DESeq
DiffBind
DESeq
DiffBind
10.3 years ago
Rory Stark
★ 5.2k
0
votes
0
replies
625
views
Fwd: problem RangedData
11.3 years ago
Silvia von der Heyde
▴ 20
0
votes
0
replies
696
views
Wie ein Hollywood Star abnehmen
14.4 years ago
Dr. Minette Schmidt
▴ 10
0
votes
0
replies
1.0k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization
hgu133a
hgu95a
cdf
probe
affy
gcrma
PROMISE
Normalization
hgu133a
hgu95a
16.6 years ago
Yan Zhang
▴ 130
0
votes
0
replies
617
views
Take part iin this employment process
16.4 years ago
Geoffrey Downs
▴ 10
0
votes
0
replies
836
views
persistent errors
Pharmacogenomics
Pharmacogenomics
19.3 years ago
Edoardo Saccenti
▴ 130
0
votes
1
reply
605
views
Unable to install package curatedMetagenomicData using R 3.3.1
software error
6.8 years ago
kohjy
• 0
0
votes
0
replies
820
views
Beadarray Filtering by Probequality
beadarray
beadarray
11.7 years ago
Guest User
★ 13k
1
vote
2
replies
653
views
Different results from blockwiseModules and blockwiseConsensusModules individual TOM
RNASeqData
WGCNA
consensusnetworks
4 months ago
Levi
• 0
0
votes
0
replies
972
views
Illumina Human 6 V1 expression annotation file
Annotation
Annotation
11.1 years ago
Jinyan Huang
▴ 110
0
votes
0
replies
245
views
ATACseq- Counts around TSS plot
DiffBind
ATACSeq
3 months ago
inna.gur
• 0
0
votes
0
replies
859
views
Drop of soft-threshold curve with high power values
wgcna
picksoftthreshold
scale-free topology
co-expression network
6.0 years ago
marcantoine.guery
• 0
0
votes
0
replies
784
views
Plotting bed8 with Sushi possible?
sushi
bed
5.6 years ago
maltethodberg
▴ 170
0
votes
0
replies
853
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr
expressionset
5.8 years ago
jirkanov
• 0
0
votes
0
replies
702
views
heatmap.2
16.7 years ago
Max Kauer
▴ 140
0
votes
0
replies
859
views
Problems in running easyRNASeq
Annotation
BSgenome
BSgenome
Annotation
BSgenome
BSgenome
11.1 years ago
pepap
▴ 10
0
votes
0
replies
904
views
readChp in affxparser
affxparser
affxparser
15.3 years ago
Henrik Bengtsson
★ 2.4k
0
votes
2
replies
1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
5.1 years ago
Samuel Lee
• 0
0
votes
0
replies
610
views
C.V function in Agi4x44PreProcess
Annotation
Annotation
11.9 years ago
Muralidharan V
▴ 60
0
votes
0
replies
889
views
Microarray data normalization
Normalization
GO
Cancer
probe
affy
Normalization
GO
Cancer
probe
affy
9.7 years ago
Levi Waldron
▴ 80
0
votes
0
replies
380
views
error
QuaternaryProd
plasFIA
gpuMagic
updated 2.1 years ago by
shepherl
3.8k • written 2.1 years ago by
مریم
• 0
0
votes
0
replies
607
views
How could output some results of siggenes package?
19.4 years ago
Yanqin Yang
▴ 250
0
votes
0
replies
567
views
affy package ?s
Normalization
probe
affy
Normalization
probe
affy
21.1 years ago
Luckey, John
▴ 90
0
votes
0
replies
1.1k
views
[R-sig-hpc] About Multicore: mclapply
GO
Cancer
GO
Cancer
12.3 years ago
Martin Morgan
25k
0
votes
0
replies
328
views
Limma: A values in topTable
probe
limma
probe
limma
18.8 years ago
Gordon Smyth
50k
0
votes
0
replies
815
views
DSC final call and scholarships
17.6 years ago
Paul Murrell
▴ 60
0
votes
0
replies
430
views
question about the code in Lab 4 - Differential Expression and Linear Modeling using limma(Estrogen Data) on http://www.bioconductor.org/workshops/20…
18.5 years ago
Ren Na
▴ 250
0
votes
0
replies
725
views
hgu133plus2 normalization
Microarray
hgu133plus2
PROcess
Microarray
hgu133plus2
PROcess
17.1 years ago
Bin Zheng
▴ 10
0
votes
0
replies
675
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.0 years ago
Mr.RB
▴ 20
0
votes
0
replies
691
views
Problems with Hu6800 and GCRMA
Microarray
hu6800
probe
gcrma
Microarray
hu6800
probe
gcrma
20.1 years ago
Stiles, David NIH/NIDDK
▴ 50
0
votes
0
replies
822
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
16.8 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
765
views
Accessing Slots in marrayRaw objects
Normalization
Normalization
21.5 years ago
Paul Boutros
▴ 200
0
votes
0
replies
944
views
R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry
R
mzR
6.0 years ago
andreas.breidbach
• 0
0
votes
1
reply
1.0k
views
PGSEA Steps Using Bioconductor
microarray
pgsea
updated 8.2 years ago by
Dan Tenenbaum
★ 8.2k • written 8.2 years ago by
livdiehard
• 0
0
votes
0
replies
98
views
How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
27 days ago
feather-W
• 0
0
votes
1
reply
1.2k
views
Error pushing to svn from git
git-svn bridge
svn
8.5 years ago
Tim Peters
▴ 170
0
votes
0
replies
751
views
Need help in Anova design (contrast.tratment)
limma
limma
13.6 years ago
ashwin Vishnuvardhana
▴ 50
0
votes
1
reply
908
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by
James W. MacDonald
65k • written 2.6 years ago by
cmfield
• 0
0
votes
0
replies
571
views
limma anova table?
limma
limma
18.2 years ago
Jianping Jin
▴ 890
0
votes
0
replies
627
views
Re: [R] Installing GO 1.7.0
GO
PROcess
GO
PROcess
19.1 years ago
Seth Falcon
★ 7.4k
1,000 results • Page
1 of 20
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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Gordon Smyth
50k
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