Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
3
replies
695
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by
Keasiykan
• 0
1
vote
3
replies
289
views
miRTarRnaseq library
miRNATarget
mirTarRnaSeq
updated 7 weeks ago by
mercedeh.movassagh
▴ 10 • written 8 weeks ago by
María
• 0
0
votes
3
replies
152
views
ChAMP installation issue
Cha
ChAMP
5 days ago • updated 3 days ago
e1271094
• 0
0
votes
3
replies
554
views
Suggested package missing from Development version of Bioconductor
Devel
updated 7 months ago by
shepherl
3.9k • written 7 months ago by
Richard
• 0
0
votes
3
replies
75
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 13 hours ago by
damian.szk
▴ 80 • written 16 hours ago by
ninidea
• 0
0
votes
3
replies
881
views
How can we use the organism database created by makeorgPackageFromNCBI to KEGG and GO analysis using clusterprofiler package.
clusterProfiler
OrganismDb
updated 5 months ago by
Guido Hooiveld
★ 4.0k • written 5 months ago by
Aastha Kapoor
• 0
0
votes
3
replies
748
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 10 months ago by
Erik Wright
▴ 150 • written 10 months ago by
Till
▴ 30
1
vote
3
replies
1.6k
views
conumee with Infinium MethylationEPIC v2.0
MethylationEPICv2.0
conumee
updated 9 months ago by
sgomez
• 0 • written 14 months ago by
luca.s
▴ 50
0
votes
3
replies
269
views
problems updating package
TrajectoryGeometry
12 weeks ago
michael.shapiro
• 0
0
votes
3
replies
1.5k
views
Not able to install clusterProfiler
clusterProfiler
updated 3 months ago by
Perry
• 0 • written 10 months ago by
Snehal
• 0
0
votes
3
replies
3.4k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 8 months ago by
andresrabinovich
• 0 • written 19 months ago by
thithusuong.nguyen
• 0
0
votes
3
replies
495
views
determine if R package or it's dependencies functionality require internet access
biomaRt
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
Marilyn
• 0
0
votes
3
replies
778
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 8 months ago by
Robert Ivanek
▴ 730 • written 8 months ago by
Michael
• 0
1
vote
3
replies
269
views
cBioPortalData loads empty z-score expression table
cBioPortalData
updated 8 weeks ago by
Marcel Ramos
700 • written 8 weeks ago by
Astrid Deschênes
• 0
0
votes
3
replies
219
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 15 days ago by
ATpoint
★ 4.1k • written 16 days ago by
james.zhang20
• 0
1
vote
3
replies
890
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 23 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
3
replies
1.2k
views
pathview error "negative length vectors are not allowed
pathview
kegg
KEGG
updated 7 months ago by
Benji Bromberg
▴ 20 • written 8 months ago by
Mauricio Diego
• 0
1
vote
3
replies
1.6k
views
regionCounts() from csaw - object 'fancy_mseq' not found
ATACSeq
regionCounts
csaw
updated 5 months ago by
dineika.chandrananda
• 0 • written 2.0 years ago by
zgraytho88
• 0
0
votes
3
replies
716
views
insufficient unique points for computing knee/inflection points
DropletUtils
SingleCellData
updated 9 months ago by
ATpoint
★ 4.1k • written 9 months ago by
p.vlachou-efstathiou
• 0
0
votes
3
replies
591
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
10 months ago
Alexandros
• 0
0
votes
3
replies
607
views
TPP2D::import2dDataset() does not return value
TPP2D
updated 9 months ago by
nils.kurzawa
▴ 20 • written 9 months ago by
Tobias
▴ 40
1
vote
3
replies
1.9k
views
enrichKEGG results for non-model organism
clusterProfiler
enrichment
KEGG
updated 3 months ago by
cinzia.spagnoli
• 0 • written 23 months ago by
AP
• 0
2
votes
2
replies
2.4k
views
Biostatistician Position: UMass Medical School
Microarray
Microarray
written 16.8 years ago by
David Lapointe
▴ 190
5
votes
2
replies
693
views
outdated GEOmetadb.sqlite
GEOmetadb
15 months ago • updated 3 months ago
Robert Castelo
★ 3.3k
0
votes
2
replies
1.3k
views
WGCNA: Picking soft threshold before and after batch effect correction for Microbial data
wgcna
WGCNA
written 2.1 years ago by
bioinformaticssrm2011
• 0
0
votes
2
replies
353
views
combat output NaN
sva
6 months ago
maxixian1990
• 0
0
votes
2
replies
281
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 28 days ago
isaac.vock
• 0
1
vote
2
replies
225
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
4 days ago • updated 1 day ago
BioinfGuru
▴ 30
0
votes
2
replies
272
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
9 weeks ago
Sam
▴ 10
0
votes
2
replies
658
views
Can't post a job oppurtunity
JobPosting
job
updated 4 months ago by
alexandre.blais
▴ 50 • written 9 months ago by
jlaird1
• 0
0
votes
2
replies
282
views
Error in msaFun Cannot open input file. No alignment!
msa
written 8 weeks ago by
Kamil Slowikowski
▴ 30
0
votes
2
replies
314
views
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
CopywriteR
CopyhelpeR
6 weeks ago
fer_talavera
• 0
0
votes
2
replies
84
views
Numerical differences in DESeq2 output depending on different design matrix construction
DESeq2
updated 10 minutes ago by
JKim
• 0 • written 19 hours ago by
Ken C
• 0
1
vote
2
replies
235
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
29 days ago
Le
• 0
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by
Manuel
• 0 • written 8 months ago by
xlu.cpu
• 0
0
votes
2
replies
89
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
4 days ago • updated 3 days ago
Yveto
• 0
0
votes
2
replies
1.1k
views
understanding differences in RSEM, STAR outputs and featureCounts
RNASeqData
Rsubread
mapping
featurecounts
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
vitoriastavis
• 0
2
votes
2
replies
685
views
biomaRt error message: Error in textConnection(bmResult) : invalid 'text' argument
biomaRt
4 months ago
bd2000
▴ 30
0
votes
2
replies
542
views
No compilation on Windows y compilation on linux
Devel
PackageType
deve
12 months ago • updated 11 months ago
Franck RICHARD
• 0
0
votes
2
replies
606
views
msa Installation failed - please help
Install
msa
11 months ago
Ido
• 0
1
vote
2
replies
739
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 10 months ago by
malat1_t
▴ 10
2
votes
2
replies
190
views
[DiffBind] Obtaining normalization factors
DiffBind
5 weeks ago • updated 4 weeks ago
Henry
▴ 10
1
vote
2
replies
821
views
Error: biomaRt has encountered an unexpected server error.
biomaRt
updated 11 months ago by
Mike Smith
★ 6.5k • written 11 months ago by
Yijing
• 0
0
votes
2
replies
262
views
TCGA-GBM subtype tumor
curatedTCGAData
updated 3 months ago by
Marcel Ramos
700 • written 3 months ago by
vicmonm5
• 0
0
votes
2
replies
446
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec
read.FCS
flowCore
6 months ago
mrescan
• 0
0
votes
2
replies
2.7k
views
How to get the rsID of 4 million SNPA
ensembldb
SNP
SNPData
genomes
written 2.2 years ago by
Weiqiong
• 0
0
votes
2
replies
358
views
Singlecell protein surface (ADT) pseudotime techniques
monocle
slingshot
7 months ago
EspressoKris
▴ 10
0
votes
2
replies
362
views
bug in block.plsda from mixOmics?
mixOmics
7 months ago
Lluís Revilla Sancho
▴ 730
0
votes
2
replies
1.3k
views
using featureCounts (Subread) to count only spliced reads per gene - behavior of --splitOnly with PE data?
Rsubread
7 months ago
Gregory
• 0
0
votes
2
replies
486
views
Can you help me generate a Bsgenome of the fusion genome of a human and HIV-1 virus?
BSgenome.Hsapiens.NCBI.GRCh38
6 months ago
13273976287
• 0
402 results • Page
2 of 9
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Popular Question
to
Johannes Rainer
★ 2.0k
Locations
• All
United States,
3 minutes ago
WEHI, Melbourne, Australia,
14 minutes ago
Melbourne, Australia,
15 minutes ago
The city by the bay,
1 hour ago
Poland,
1 hour ago
Traffic: 398 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6