Showing : ANOVA • reset
2
votes
6
replies
397
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How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
25 days ago Chris • 0
2
votes
2
replies
566
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
18 months ago evan.j.williams ▴ 10
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
3.0 years ago Antonio M. • 0
2
votes
3
replies
1.3k
views
ANOVA Limma
ANOVA limma
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
1
vote
1
reply
741
views
DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 20
2
votes
4
replies
2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
3.4 years ago ecg1g15 ▴ 20
5
votes
13
replies
2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 4.7 years ago by 41k • written 4.7 years ago by • 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.9 years ago by • 0 • written 5.3 years ago by • 0
0
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1
reply
1.6k
views
edgeR 2-way ANOVA testing
edger ANOVA
updated 5.5 years ago by 50k • written 5.5 years ago by • 0
5
votes
6
replies
1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 270
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma anova
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 120
1
vote
1
reply
856
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
1
vote
1
reply
760
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
1
vote
8
replies
1.5k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 6.2 years ago by 41k • written 6.2 years ago by • 0
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova gene expression
updated 6.5 years ago by 65k • written 6.5 years ago by • 0
2
votes
6
replies
2.1k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 2.2 years ago by ▴ 90 • written 6.8 years ago by ▴ 90
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 6.9 years ago by ★ 28k • written 6.9 years ago by • 0
0
votes
6
replies
4.4k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.9 years ago by 50k • written 6.9 years ago by ▴ 50
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger rnaseq anova
updated 7.1 years ago by ★ 28k • written 7.1 years ago by • 0
1
vote
4
replies
1.5k
views
DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 20
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 80
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
8.0 years ago David ▴ 860
3
votes
4
replies
1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
2
votes
4
replies
1.5k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
8.8 years ago BM • 0
8
votes
4
replies
5.8k
views
Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 8.9 years ago by ★ 7.9k • written 8.9 years ago by ▴ 20
3
votes
14
replies
4.1k
views
Moderated t-test in Anova
anova moderated t-test
updated 8.9 years ago by 50k • written 8.9 years ago by • 0
4
votes
2
replies
9.1k
views
DESeq2 LRT output help
deseq2 LRT anova
9.0 years ago rclaire ▴ 20
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
2
votes
8
replies
3.7k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 9.3 years ago by 50k • written 9.3 years ago by • 0
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 9.3 years ago by 50k • written 9.3 years ago by • 0
3
votes
3
replies
10k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 2.5 years ago by 41k • written 9.6 years ago by ▴ 10
32 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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