Showing : ANOVA • reset
3
votes
14
replies
4.1k
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Moderated t-test in Anova
anova moderated t-test
updated 8.9 years ago by 50k • written 8.9 years ago by • 0
0
votes
5
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1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
8.0 years ago David ▴ 860
2
votes
6
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2.1k
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Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 2.2 years ago by ▴ 90 • written 6.8 years ago by ▴ 90
3
votes
3
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1.8k
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Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 4.9 years ago by • 0 • written 5.3 years ago by • 0
2
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8
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3.7k
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EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 9.3 years ago by 50k • written 9.3 years ago by • 0
3
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1
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1.5k
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edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
8
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4
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5.8k
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Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 8.9 years ago by ★ 7.9k • written 8.9 years ago by ▴ 20
2
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4
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1.5k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
3
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3
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2.1k
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Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 80
1
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4
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1.5k
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DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 7.5 years ago by 42k • written 7.5 years ago by ▴ 20
0
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3
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1.4k
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Anova test on gene expression data
Anova gene expression
updated 6.5 years ago by 65k • written 6.5 years ago by • 0
2
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3
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2.1k
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edgeR ANOVA-like analysis
edger rnaseq anova
updated 7.2 years ago by ★ 28k • written 7.2 years ago by • 0
0
votes
6
replies
4.4k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.9 years ago by 50k • written 6.9 years ago by ▴ 50
2
votes
2
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2.1k
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EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 6.9 years ago by ★ 28k • written 6.9 years ago by • 0
1
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8
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1.5k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
1
vote
1
reply
762
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
1
vote
1
reply
857
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
3
votes
1
reply
1.1k
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ANOVA-like test via treat() in limma
limma anova
updated 5.8 years ago by 50k • written 5.8 years ago by ▴ 120
5
votes
6
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1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 270
0
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1
reply
1.6k
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edgeR 2-way ANOVA testing
edger ANOVA
updated 5.5 years ago by 50k • written 5.5 years ago by • 0
4
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2
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9.1k
views
DESeq2 LRT output help
deseq2 LRT anova
9.0 years ago rclaire ▴ 20
3
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4
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1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 8.1 years ago by ★ 28k • written 8.1 years ago by • 0
3
votes
3
replies
10k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 2.5 years ago by 42k • written 9.6 years ago by ▴ 10
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 9.3 years ago by 50k • written 9.3 years ago by • 0
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
3.0 years ago Antonio M. • 0
2
votes
2
replies
566
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
18 months ago evan.j.williams ▴ 10
5
votes
13
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2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 4.7 years ago by 42k • written 4.7 years ago by • 0
2
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4
replies
2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
3.5 years ago ecg1g15 ▴ 20
1
vote
1
reply
744
views
DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 20
2
votes
3
replies
1.3k
views
ANOVA Limma
ANOVA limma
updated 3.2 years ago by 65k • written 3.2 years ago by ▴ 10
2
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1
reply
3.5k
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RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
8.8 years ago BM • 0
2
votes
6
replies
409
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
29 days ago Chris • 0
32 results • Page 1 of 1
Recent ...
Replies
Comment: Cannot connect to ExperimentHub server by Jiayu • 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea() by Chris • 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
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