Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Anova
•
reset
2
votes
6
replies
399
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
27 days ago
Chris
• 0
2
votes
2
replies
566
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip
MicroarrayData
Anova
18 months ago
evan.j.williams
▴ 10
3
votes
4
replies
1.4k
views
Pipeline for an Anova-like analysis in edgeR
edgeR
anova
rna-seq
3.0 years ago
Antonio M.
• 0
2
votes
3
replies
1.3k
views
ANOVA Limma
ANOVA
limma
updated 3.2 years ago by
James W. MacDonald
65k • written 3.2 years ago by
georgina.fqw
▴ 10
1
vote
1
reply
743
views
DESeq2 interactions genotype condition code needed
DESeq2
anova
condition
genotypeeval
updated 3.4 years ago by
ATpoint
★ 4.1k • written 3.4 years ago by
Dan
▴ 20
2
votes
4
replies
2.8k
views
Compare 3 RNASeq groups with no control in DESeq2
anova
RNASeqData
tukeyTest
DESeq2
3.5 years ago • updated 3.4 years ago
ecg1g15
▴ 20
5
votes
13
replies
2.7k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2
DEG
ANOVA
Batch effect
Comparison
updated 4.7 years ago by
Michael Love
41k • written 4.7 years ago by
amin.ghareyazi
• 0
3
votes
3
replies
1.8k
views
Differential Expression Analysis in edgeR using Anova
edger
anova
gene expression
Dispersion
updated 4.9 years ago by
onlychainsaw2019
• 0 • written 5.3 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
1.6k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
martyna.broda
• 0
5
votes
6
replies
1.5k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma
anova
decidetests
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
mikhael.manurung
▴ 270
3
votes
1
reply
1.1k
views
ANOVA-like test via treat() in limma
limma
anova
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
k.vitting.seerup
▴ 120
1
vote
1
reply
856
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma
anova
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
wewolski
▴ 10
1
vote
1
reply
761
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
raya.girish
• 0
1
vote
8
replies
1.5k
views
design versus interaction term similarities and/or differences?
deseq2
ANOVA
design
interaction term
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
tarun2
• 0
0
votes
3
replies
1.4k
views
Anova test on gene expression data
Anova
gene expression
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
sally_b86
• 0
2
votes
6
replies
2.1k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq
limma
voom
anova
updated 2.2 years ago by
tcalvo
▴ 90 • written 6.8 years ago by
David R
▴ 90
2
votes
2
replies
2.1k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR
ANOVA
t-test
contrast
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
Maiv
• 0
0
votes
6
replies
4.4k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 6.9 years ago by
Gordon Smyth
50k • written 6.9 years ago by
pbachali
▴ 50
2
votes
3
replies
2.1k
views
edgeR ANOVA-like analysis
edger
rnaseq
anova
updated 7.1 years ago by
Aaron Lun
★ 28k • written 7.1 years ago by
Tony
• 0
1
vote
4
replies
1.5k
views
DESeq2 ANOVADEV giving strange result
deseq2
anova
updated 7.5 years ago by
Michael Love
41k • written 7.5 years ago by
szenitha
▴ 20
3
votes
3
replies
2.1k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma
ANOVA
topTable
microarray
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
Konstantinos Yeles
▴ 80
0
votes
5
replies
1.8k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq
anova
metagenomics
8.0 years ago
David
▴ 860
3
votes
4
replies
1.7k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger
RNA-seq
anova
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
xiaoaozqd
• 0
2
votes
4
replies
1.5k
views
Complex ANOVA analysis in EdgeR
edger
anova
sequencing
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
kmyers2
• 0
2
votes
1
reply
3.5k
views
RNA-seq Differential expression using 3 groups
rnaseq
anova
deseq2
edger
genespring
8.8 years ago
BM
• 0
8
votes
4
replies
5.8k
views
Multiple Comparisons EdgeR
edger
multiple comparisons
anova
glm
updated 8.9 years ago by
Ryan C. Thompson
★ 7.9k • written 8.9 years ago by
chickenchamp4
▴ 20
3
votes
14
replies
4.1k
views
Moderated t-test in Anova
anova
moderated t-test
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
shaheryar
• 0
4
votes
2
replies
9.1k
views
DESeq2 LRT output help
deseq2
LRT
anova
9.0 years ago
rclaire
▴ 20
3
votes
1
reply
1.5k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger
anova
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
mmclean
• 0
2
votes
8
replies
3.7k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger
ANOVA
Design matrix
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
chwhite
• 0
3
votes
2
replies
2.5k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger
anova
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
chwhite
• 0
3
votes
3
replies
10k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2
Anova
updated 2.5 years ago by
Michael Love
41k • written 9.6 years ago by
alex.pelletier
▴ 10
32 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
Awards
• All
Scholar
to
ATpoint
★ 4.1k
Popular Question
to
Ben
▴ 50
Popular Question
to
Sam
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
▴ 10
Locations
• All
United States,
1 minute ago
United States,
3 minutes ago
France,
8 minutes ago
European Union,
14 minutes ago
United Kingdom,
22 minutes ago
Traffic: 506 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6