Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
BSSeq
•
reset
7
votes
5
replies
1.8k
views
Strange error in bsseq when trying to assign seqinfo
bsseq
genomeinfodb
genomicranges
seqinfo
written 6.0 years ago by
rcavalca
▴ 140
7
votes
11
replies
3.6k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
enricoferrero
▴ 660
6
votes
14
replies
4.8k
views
How to correctly import Bismark coverage files into bsseq?
bsseq
bismark
methylation
8.4 years ago
enricoferrero
▴ 660
6
votes
5
replies
1.1k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 7 months ago by
Peter Hickey
▴ 740 • written 9 months ago by
richardallenfriedmanbrooklyn
▴ 20
4
votes
2
replies
1.4k
views
Bounded Regression with Limma for RRBS?
limma
rrbs
bsseq
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
nhejazi
• 0
4
votes
8
replies
382
views
Memory errors using read.bismark?
dmrseq
bsseq
updated 13 days ago by
Peter Hickey
▴ 740 • written 21 days ago by
Juan Higareda
• 0
2
votes
3
replies
1.7k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 6.9 years ago by
Peter Hickey
▴ 740 • written 6.9 years ago by
Martin Aryee
▴ 20
1
vote
3
replies
1.9k
views
bsseq BSmooth error
bsseq
8.1 years ago
enricoferrero
▴ 660
1
vote
2
replies
1.5k
views
dmrFinder error
bsseq
bsseq
updated 10.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 10.5 years ago by
Guest User
★ 13k
1
vote
6
replies
1.7k
views
Unusually long running times for getMeth function since latest release
bsseq
delayedarray
updated 6.8 years ago by
Peter Hickey
▴ 740 • written 6.8 years ago by
Alejandro Reyes
★ 1.9k
1
vote
3
replies
1.9k
views
read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
methylSig
bsseq
updated 20 months ago by
Peter Hickey
▴ 740 • written 20 months ago by
carla.geiger
• 0
1
vote
0
replies
1.7k
views
Multiple linear regression model for DMR detection?
methylation
linear model
dmr
bsseq
biseq
8.4 years ago
enricoferrero
▴ 660
1
vote
3
replies
1.4k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
7.3 years ago
zuupcat
• 0
1
vote
2
replies
2.5k
views
BS-seq differential methylation analysis using continuous variable
dmr
methylation
deseq2
bsseq
biseq
updated 8.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 8.5 years ago by
enricoferrero
▴ 660
1
vote
2
replies
1.0k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 6.0 years ago by
emmascottgm
• 0 • written 6.0 years ago by
rcavalca
▴ 140
0
votes
6
replies
1.9k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 7.1 years ago by
Peter Hickey
▴ 740 • written 7.1 years ago by
brandon.le
• 0
0
votes
6
replies
1.8k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
6.5 years ago
ravi.tharakan
• 0
0
votes
3
replies
1.2k
views
Determination of Hypo- or Hyper- methylation
dmrseq
bsseq
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
Bruno Verstraeten
• 0
0
votes
1
reply
726
views
Varying results from DSS when specifying different BSobj
DSS
DSS-single
bsseq
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
varunorama
• 0
0
votes
0
replies
727
views
DSS smoothing RRBS and strand collapse
DSS
BSSeq
4.1 years ago
stephanie.rialle
• 0
0
votes
1
reply
1.1k
views
Gene level methylation values
methylation
methylKit
bsseq
updated 2.6 years ago by
alex.gos90
▴ 10 • written 2.8 years ago by
ag1805x
▴ 80
0
votes
2
replies
852
views
Locating nearest genes in RRBS analysis
hiAnnotator
bsseq
DifferentialMethylation
edgeR
RRBSdata
24 months ago • updated 23 months ago
Mageiros
• 0
0
votes
0
replies
1.4k
views
Package announcement: bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
Sequencing
Alignment
Cancer
Colon
bsseq
11.8 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
155
views
No output from read.bismark with bismark cov.files
bsseq
methylation
updated 29 days ago by
James W. MacDonald
65k • written 4 weeks ago by
ja569116
• 0
0
votes
0
replies
1.1k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
11.4 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
1
reply
1.4k
views
Minimal input data format for bsseq
Sequencing
Alignment
bsseq
Sequencing
Alignment
bsseq
updated 11.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.4 years ago by
Martin Aryee
▴ 20
0
votes
2
replies
1.9k
views
bsseq and BSmooth with RRBS
Sequencing
bsseq
Sequencing
bsseq
updated 11.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 11.2 years ago by
Alex Gutteridge
▴ 650
0
votes
1
reply
1.1k
views
bsseq in devel
bsseq
bsseq
updated 10.8 years ago by
Tim Triche
★ 4.2k • written 10.8 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
1.9k
views
bsmooth and bsseq for RRBS
bsseq
bsseq
updated 10.3 years ago by
Tim Triche
★ 4.2k • written 10.3 years ago by
Guest User
★ 13k
0
votes
4
replies
2.6k
views
Error using Bsmooth.tstat due to NAs
Coverage
bsseq
updated 6 months ago by
Adam
• 0 • written 9.6 years ago by
Guest User
★ 13k
0
votes
3
replies
2.5k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 6 months ago by
Adam
• 0 • written 9.2 years ago by
unmeshj
• 0
0
votes
2
replies
2.1k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS
bsseq
summarizedexperiment
8.7 years ago • updated 8.6 years ago
Tim Peters
▴ 170
0
votes
4
replies
1.8k
views
Error while smoothing BS-seq data with bsseq
bsseq
updated 7.0 years ago by
Nikolay.Oskolkov
• 0 • written 8.6 years ago by
andreucat91
• 0
0
votes
0
replies
1.9k
views
Job:
Bioinformatics Data Analyst - IMP/IMBA Vienna
chipseq
atac-seq
gro-seq
bsseq
rnaseq
Job
8.5 years ago
Jaritz,Markus
▴ 20
0
votes
3
replies
1.7k
views
Is there any way to set bsseq object as 'smoothed'?
bsseq
bisulfite
8.0 years ago
biohack92
• 0
0
votes
0
replies
1.0k
views
Does bsseq package work with technical replicates?
bsseq
WGBS
7.4 years ago
Welliton de Souza
▴ 70
0
votes
0
replies
944
views
A few questions about BSseq package
bsseq
7.4 years ago
Stephen
• 0
0
votes
1
reply
1.3k
views
warning message with BSseq function
bsseq
updated 7.2 years ago by
Kasper Daniel Hansen
★ 6.5k • written 7.2 years ago by
marie.trijau
• 0
38 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Awards
• All
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.8k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Popular Question
to
tangming2005
▴ 190
Locations
• All
United States,
just now
Melbourne, Australia,
3 minutes ago
United States,
4 minutes ago
France,
5 minutes ago
Sweden,
8 minutes ago
Traffic: 884 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6