Showing : ChIPpeakAnno • reset
0
votes
0
replies
152
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
11 weeks ago nilanjanamani88 • 0
1
vote
5
replies
546
views
ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
6 months ago ilaria.maurizio • 0
0
votes
0
replies
274
views
Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
7 months ago franciscrick41 • 0
3
votes
7
replies
845
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 7 months ago by • 0
2
votes
14
replies
1.1k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 8 months ago by 65k • written 8 months ago by ▴ 10
0
votes
1
reply
476
views
genomeStyles error in ChIPpeakAnno
Chippeakanno ChIPpeakAnno
updated 9 months ago by 65k • written 9 months ago by • 0
0
votes
2
replies
593
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 12 months ago by ▴ 70 • written 12 months ago by ▴ 140
9
votes
16
replies
1.7k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
12 months ago Chris • 0
1
vote
2
replies
622
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
15 months ago stacy.genovese • 0
1
vote
1
reply
598
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 16 months ago by ★ 1.3k • written 16 months ago by ▴ 10
0
votes
2
replies
712
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
18 months ago michela ▴ 20
0
votes
1
reply
579
views
Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 20 months ago by 65k • written 20 months ago by • 0
1
vote
1
reply
624
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
20 months ago mehdi • 0
0
votes
1
reply
700
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 23 months ago by ★ 1.3k • written 23 months ago by • 0
0
votes
1
reply
788
views
peak annotation
ChIPpeakAnno Annotation
updated 2.0 years ago by ▴ 70 • written 2.1 years ago by ▴ 670
1
vote
2
replies
1.6k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
2.2 years ago Bakhtiyar • 0
0
votes
2
replies
887
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.2 years ago Bogdan ▴ 670
2
votes
6
replies
2.1k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 2.2 years ago by ▴ 70 • written 2.2 years ago by • 0
0
votes
0
replies
735
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
2.4 years ago Nadav • 0
1
vote
2
replies
2.4k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
2.5 years ago lexi.kellington • 0
0
votes
4
replies
2.1k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
2.5 years ago Tongjun • 0
1
vote
6
replies
1.5k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
2.8 years ago Arunima ▴ 10
1
vote
3
replies
904
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 2.8 years ago by ★ 4.3k • written 2.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.0 years ago by • 0 • written 5.0 years ago by • 0
2
votes
2
replies
1.3k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
3.1 years ago Lucky • 0
7
votes
9
replies
1.8k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 3.6 years ago by ★ 4.3k • written 3.7 years ago by ▴ 140
2
votes
2
replies
796
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
3.7 years ago C T ▴ 140
1
vote
2
replies
949
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
4.7 years ago liruiradiant • 0
0
votes
4
replies
1.2k
views
chippeakanno file reading error
ChiPpeakAnno
5.1 years ago saddamhusain77 • 0
1
vote
6
replies
1.3k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
5.2 years ago ngs06 ▴ 20
2
votes
10
replies
3.2k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 5.3 years ago by ★ 4.3k • written 7.1 years ago by ▴ 30
0
votes
7
replies
1.5k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by • 0
3
votes
6
replies
1.6k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
5.8 years ago 94133 • 0
0
votes
1
reply
1.1k
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
5.8 years ago ge2sasag • 0
1
vote
1
reply
954
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by • 0
2
votes
2
replies
1.6k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 30
0
votes
3
replies
1.3k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 6.2 years ago by ★ 4.3k • written 6.2 years ago by ▴ 740
1
vote
1
reply
933
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
1
vote
2
replies
2.4k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
6.4 years ago inzirio ▴ 10
1
vote
4
replies
1.5k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 6.4 years ago by ★ 1.3k • written 6.4 years ago by • 0
0
votes
1
reply
1.1k
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 6.5 years ago by • 0 • written 11.4 years ago by ▴ 120
2
votes
3
replies
2.7k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 6.5 years ago by • 0 • written 8.5 years ago by • 0
0
votes
1
reply
1.3k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 6.5 years ago by • 0 • written 7.6 years ago by • 0
0
votes
1
reply
947
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
5
votes
4
replies
4.7k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
7.0 years ago • updated 6.8 years ago salamandra ▴ 20
4
votes
3
replies
1.3k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 110
1
vote
1
reply
1.1k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 10
0
votes
3
replies
2.4k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by • 0
22
votes
10
replies
7.4k
views
Error in GRanges: could not find symbol "recursive" in environment of the generic function
granges chippeakanno
updated 7.1 years ago by ▴ 10 • written 7.1 years ago by ▴ 80
2
votes
3
replies
1.6k
views
ChIPpeakAnno-annotation of peaklist with gene names, creating heat maps
chippeakanno overlappingpeaks annotation
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
France, 16 minutes ago
United States, 29 minutes ago
Australia, 35 minutes ago
Singapore, 1 hour ago
Macao, 1 hour ago
Traffic: 742 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6