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0
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2
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341
views
NCBI protein conversion to CDNA and NCBI gene (in R)
convert
updated 5 months ago by 65k • written 5 months ago by • 0
1
vote
3
replies
464
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
2
votes
5
replies
792
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago • updated 5 months ago j_denton • 0
2
votes
1
reply
682
views
Using oligo or xps to read and convert RNA-seq data CEL file to txt file.
oligoData DataImport oligo RNASeqData convert
updated 10 months ago by 65k • written 10 months ago by • 0
0
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2
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1.2k
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suggestions/comments on DESeq transcript wise analysis
convert DESeq convert DESeq
written 12.2 years ago by ▴ 190
1
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2
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6.2k
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How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.4 years ago by • 0
0
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0
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632
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TFutils database
TFutils mouse gene convert
2.9 years ago nicocillari • 0
2
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6
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1.6k
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getLDS error in scan
biomaRt getLDS convert gene symbols
updated 3.6 years ago by ★ 6.5k • written 3.6 years ago by • 0
1
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4
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1.4k
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RNA-seq analysis using R
limma rnaseq convert R
updated 12 months ago by 50k • written 5.4 years ago by • 0
0
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3
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convert affy CEL files to data.frame??
convert convert
updated 5.7 years ago by • 0 • written 13.3 years ago by ▴ 40
1
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7
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2.2k
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Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
1
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3
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1.4k
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To convert MAList to ExpressionSet using R package 'convert'
convert
updated 7.5 years ago by 50k • written 7.5 years ago by • 0
0
votes
5
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6.1k
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How to reverse translate amino acid sequence into mammalian codon optimised cDNA
convert translation
written 9.5 years ago by ▴ 20
1
vote
1
reply
1.5k
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converting amino-acid one letter code into cDNA sequene
convert aminoacid-onlettercode cDNA
7.9 years ago arvind90.psc • 0
1
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2
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2.5k
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making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.2 years ago by • 0
1
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2
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3.3k
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minfi, bumphunter + complex experimental design, and 3 other 450K queries
GO convert minfi bumphunter GO convert minfi bumphunter
updated 8.3 years ago by ▴ 30 • written 10.0 years ago by ★ 3.9k
1
vote
1
reply
1.7k
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Error of GDS2eSet() function
convert geoquery error GDS2eSet
updated 8.3 years ago by 65k • written 8.3 years ago by • 0
0
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3
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2.0k
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Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
Cancer convert minfi Cancer convert minfi
updated 8.5 years ago by • 0 • written 10.2 years ago by ★ 6.5k
0
votes
0
replies
1.1k
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How to convert codominant Microsatellite two column data into illumina AB format?
Microsatellite Convert recode
8.6 years ago parka • 0
0
votes
3
replies
11k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
6
votes
1
reply
3.1k
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[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
updated 9.3 years ago by ▴ 370 • written 10.4 years ago by ▴ 160
5
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5
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2.0k
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Metagenomic analysis: Aligning ChIPseq data on TSS
metagenomics chipseq biomart shortread convert biomaRt
9.6 years ago patrick.schordert ▴ 30
0
votes
1
reply
2.0k
views
Converting .gpr files to .csv files
Microarray GO convert
updated 9.7 years ago by 65k • written 9.7 years ago by ★ 13k
0
votes
5
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2.5k
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Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome convert BSgenome PWMEnrich MotifDb
updated 9.7 years ago by ▴ 80 • written 9.7 years ago by ▴ 50
0
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0
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1.4k
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ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.1k
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narrow and xstringset
convert convert
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 680
0
votes
2
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Biomart annotation
annotate convert annotate convert
updated 9.8 years ago by ▴ 190 • written 9.8 years ago by ▴ 40
0
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2
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1.8k
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ShortReadQ and conversion of quality scores to characters
convert convert
updated 9.8 years ago by 25k • written 9.8 years ago by ▴ 310
0
votes
1
reply
1.7k
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SomaticSignatures
Annotation Cancer convert Annotation Cancer convert
updated 9.8 years ago by ★ 1.3k • written 9.8 years ago by ▴ 90
0
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6
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converting probeset id to gene id's : fRMA
probe affy convert frma probe affy convert frma
updated 9.9 years ago by ★ 3.0k • written 9.9 years ago by ▴ 190
0
votes
7
replies
1.7k
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Approaches to building Rle sequences from ranges
GO convert GO convert
updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ▴ 40
0
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2
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2.2k
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GRanges - coercion from dataframe
convert convert
updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 10
0
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4
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GenomicAlignments and QNAME collision
RNASeq Cancer convert Rsamtools GenomicAlignments RNASeq Cancer convert Rsamtools
updated 9.9 years ago by ▴ 90 • written 9.9 years ago by ★ 6.8k
0
votes
4
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error on loading ratioConvert() in minfi
convert minfi convert minfi
updated 10.0 years ago by ★ 6.5k • written 10.0 years ago by ★ 13k
1
vote
2
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12k
views
Mapping gene symbols to gene names (org.Hs.eg.db?)
convert convert
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.1k
0
votes
0
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1.2k
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viewApply drops feature names; transfer names between lists
Coverage convert Coverage convert
10.0 years ago Chris Seidel ▴ 80
0
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0
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2.1k
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Pathview question
Network convert pathview Network convert pathview
10.0 years ago Luo Weijun ★ 1.6k
0
votes
9
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2.6k
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ReportingTools gene IDs
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updated 10.0 years ago by 65k • written 10.0 years ago by ★ 1.5k
0
votes
5
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2.6k
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summarizeOverlaps using GRanges or bed file as reads?
convert convert
updated 10.1 years ago by 25k • written 10.1 years ago by ★ 7.9k
0
votes
0
replies
950
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BiomaRt getBM error: Unknown column
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10.1 years ago Guest User ★ 13k
0
votes
5
replies
1.7k
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A question about the function readGAlignmentPairs in GenomicRnages package
Alignment Cancer convert GenomicAlignments Alignment Cancer convert GenomicAlignments
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 50
0
votes
0
replies
1.4k
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CellMix package use with own data matrix
convert convert
10.1 years ago Riba Michela ▴ 90
0
votes
0
replies
1.3k
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crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
10.1 years ago Matthias Arnold ▴ 10
0
votes
0
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1.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
0
votes
8
replies
2.2k
views
methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
0
votes
6
replies
3.0k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
0
votes
2
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1.3k
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Tigre Package question 3
Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess
updated 10.2 years ago by ▴ 60 • written 10.2 years ago by ▴ 50
0
votes
2
replies
1.7k
views
Minfi "mapToGenome" error when attempting to generate a genomicRatioSet
convert minfi convert minfi
updated 10.3 years ago by ★ 6.5k • written 10.3 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Using GOstats with ScanArray Express Data
Organism probe convert GOstats Organism probe convert GOstats
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ★ 13k
0
votes
3
replies
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ChIPpeakAnno: TSS at - strand
Annotation convert ChIPpeakAnno Annotation convert ChIPpeakAnno
10.3 years ago Julie Zhu ★ 4.3k
50 results • Page 1 of 1
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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis by Aurora • 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
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A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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