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3.1k

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limma export log2 data agilent

updated 9.6 years ago by James W. MacDonald 66k • written 9.6 years ago by Jahn Davik ▴ 110

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3.1k

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biseq fdr data results

9.1 years ago • updated 9.0 years ago mnaymik ▴ 10

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1.5k

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edger data analysis

8.9 years ago Pau Marc Muñoz Torres ▴ 20

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963

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package data

5.7 years ago divyswar01 • 0

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1.2k

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data

9.0 years ago Bogdan ▴ 670

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1.9k

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data package submission BiocCheck

4.8 years ago j.flesch ▴ 10

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2.0k

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flowCore flowjo data

updated 9.5 years ago by Greg Finak ▴ 150 • written 9.5 years ago by AJC ▴ 10

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556

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Cytometry R Data

23 months ago hamiltond ▴ 10

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515

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BAM Segmentation CINdex VCF Data

21 months ago raven1306 • 0

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583

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HELP Data

updated 21 months ago by Guido Hooiveld ★ 4.0k • written 21 months ago by mcclurejenniferc • 0

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1.2k

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rna-seq data

updated 7.4 years ago by Gordon Smyth 50k • written 7.4 years ago by bioinformatics ▴ 10

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1.2k

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transform flow cytometry data

updated 7.4 years ago by SamGG ▴ 350 • written 7.4 years ago by cr • 0

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1.3k

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omiccircos bug hg19 hg18 data

7.0 years ago matthew.bashton • 0

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718

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cellGrowth data

6.1 years ago muitalegal888 • 0

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2.2k

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ExpressionSet Assay NanoString Error Data

updated 22 months ago by James W. MacDonald 66k • written 22 months ago by junli1988 • 0

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873

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data immunology software vaccinology

2.7 years ago Daniel • 0

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1.2k

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TCGAbiolinks data normalize l

updated 2.8 years ago by Kevin Blighe ★ 3.9k • written 2.8 years ago by DANIELA • 0

17 results • Page 1 of 1

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Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by Wei Shi ★ 3.6k

Your bam file names should be stored in a vector and then provided to the `files` parameter.

Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k

Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…

Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

I was talking about the command line version.

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0

I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …

Votes

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Answer: Documenting resources in an `ExperimentHub` package?

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

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