Showing : DataFrame • reset
11
votes
17
replies
2.8k
views
SV4Vectors DataFrame bug with haven_labelled data
S4Vectors DataFrame haven_labelled haven
updated 23 months ago by ▴ 20 • written 24 months ago by ▴ 30
1
vote
3
replies
1.5k
views
Extract specific portion of a string and paste to a new column in R
Rscript tidyr dataframe tidyverse offtopic
updated 2.3 years ago by 700 • written 2.3 years ago by • 0
1
vote
0
replies
2.2k
views
stuck on unimplemented type 'list' in 'EncodeElement'
list save dataframe
updated 2.4 years ago by 4.1k • written 2.4 years ago by ▴ 10
0
votes
1
reply
785
views
How to insert a qvalues column in a dataframe with pvalues in R
qvalues dataframe
updated 2.8 years ago by 51k • written 2.8 years ago by • 0
1
vote
4
replies
3.1k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2 dataframe ensembl gene id gene symbol entrezid
4.9 years ago jason.williams ▴ 10
1
vote
1
reply
959
views
Checking if to DataFrames are identical
S4Vectors DataFrame
5.2 years ago maltethodberg ▴ 180
5
votes
2
replies
1.1k
views
DataFrame after splitting and back
DataFrame S4Vectors
updated 5.6 years ago by ★ 11k • written 5.6 years ago by 1.6k
2
votes
2
replies
1.2k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4 dataframe left_join merge
updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 90
1
vote
5
replies
1.7k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2 dataframe pasilla
updated 5.6 years ago by 42k • written 5.6 years ago by ▴ 30
0
votes
2
replies
1.5k
views
DataFrame matrix subsetting
DataFrame subsetting S4Vectors
updated 5.8 years ago by 16k • written 5.9 years ago by • 0
1
vote
2
replies
1.4k
views
Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.1 years ago by ★ 11k • written 6.1 years ago by ▴ 60
0
votes
5
replies
4.9k
views
Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich granges distancetonearest function dataframe
7.0 years ago rbronste ▴ 60
6
votes
6
replies
6.6k
views
converting a GRangesList object with different lengths into a data frame
genomicranges grangeslist dataframe irangeslist lists
updated 7.2 years ago by ★ 11k • written 7.2 years ago by ★ 1.5k
0
votes
2
replies
1.4k
views
how to build gene.pathway data.frame for non-model organism
limma kegg topgo dataframe edger
7.2 years ago mictadlo ▴ 10
3
votes
2
replies
1.5k
views
matrix as a column of mcols of GRanges would not be extracted correctly by lapply
mcols DataFrame GRanges
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 30
2
votes
4
replies
1.7k
views
Generic functions for DataFrames of Rle objects ?
DataFrame Rle generic expression table
updated 16 months ago by 16k • written 7.5 years ago by ▴ 180
4
votes
10
replies
2.5k
views
Printing DataFrame with nested DataFrames causes error
s4vectors dataframe
updated 7.8 years ago by 16k • written 7.8 years ago by ▴ 70
2
votes
2
replies
1.3k
views
How to conditionally combine IntegerList in the DataFrame more elegantly?
r iranges integerlist DataFrame
updated 8.0 years ago by ▴ 80 • written 8.0 years ago by • 0
2
votes
2
replies
1.3k
views
getting global Fisher score for overlap of 3 GRanges object by element-wise [solved]
r DataFrame fisher-method
8.4 years ago Jurat Shahidin ▴ 80
0
votes
0
replies
848
views
Error in TopologyGSA
topologyGSA dataframe
8.5 years ago saamar.rajput • 0
1
vote
1
reply
1.8k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
9.0 years ago TimothéeFlutre ▴ 80
21 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
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It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
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