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0
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2
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970
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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 2.0 years ago by • 0 • written 2.1 years ago by ▴ 90
1
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975
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Job: Bioconductor Core developers group opening
R cloud github python git
2.3 years ago Vincent J. Carey, Jr. 6.7k
0
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1
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1.1k
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Change the interval of bed file
mappability bed python
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
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1
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992
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python and R
snpeff python tophat r RNAseq123
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
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1.0k
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Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
3.6 years ago Ewa • 0
1
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2
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1.8k
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
4.6 years ago Raito92 ▴ 60
1
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2
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1.5k
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Load data with rhdf5
rhdf5 python
updated 22 months ago by • 0 • written 4.6 years ago by • 0
2
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4
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1.3k
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 5.3 years ago by ▴ 30 • written 5.3 years ago by ▴ 10
0
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1.2k
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
5.3 years ago Fred Hutch (Recruiting) ▴ 40
0
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974
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.7 years ago Shamith.Samarajiwa ▴ 180
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0
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1.2k
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
5.9 years ago careers • 0
0
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0
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1.2k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
6.4 years ago l.brown ▴ 10
1
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1
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902
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Python functionality feature request
python bioconductor
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
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1.4k
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
6.7 years ago EMBL Recruitment • 0
2
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
6.9 years ago ematsen ▴ 20
5
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0
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1.6k
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
7.7 years ago Shamith.Samarajiwa ▴ 180
0
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1.5k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.4 years ago clif.duhn • 0
0
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2.0k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.7 years ago • updated 8.4 years ago clif.duhn • 0
0
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0
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2.1k
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
8.9 years ago Doe, Aimee ▴ 40
5
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23
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7.0k
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Convertion of indexed bam file to tsv file format
python samtools
updated 9.2 years ago by 16k • written 9.2 years ago by • 0
0
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0
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1.6k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
9.2 years ago Fiona ▴ 70
3
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4
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1.9k
views
seq2pathway error on Mac OS X
seq2pathway error python mac os x
9.3 years ago termanini ▴ 10
0
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0
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1.8k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
9.5 years ago careers • 0
23 results • Page 1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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