Showing : XCMS • reset
1
vote
3
replies
440
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 12 days ago by 67k • written 14 days ago by • 0
0
votes
1
reply
417
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 4 weeks ago by • 0 • written 4 weeks ago by ▴ 10
0
votes
2
replies
2.4k
views
Error: BiocParallel errors
xcms msdata BiocParallel
14 months ago mavamay • 0
0
votes
0
replies
571
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
17 months ago Abrianna • 0
0
votes
1
reply
643
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 19 months ago by ★ 4.5k • written 19 months ago by • 0
0
votes
0
replies
502
views
XCMS normalization
xcms
20 months ago T.RU • 0
0
votes
1
reply
741
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 21 months ago by • 0 • written 2.0 years ago by ▴ 10
0
votes
0
replies
533
views
dont find xcmsSet for peak analysis
xcms
2.1 years ago aline.lafise • 0
1
vote
4
replies
1.7k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 2.3 years ago by • 0 • written 4.0 years ago by ▴ 30
0
votes
0
replies
784
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.5 years ago mba • 0
5
votes
5
replies
1.3k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.6 years ago by ★ 2.1k • written 2.6 years ago by ▴ 20
0
votes
3
replies
1.5k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
0
votes
0
replies
784
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
3.0 years ago noerman • 0
0
votes
4
replies
17k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 2.2 years ago by 67k • written 3.2 years ago by • 0
0
votes
2
replies
1.6k
views
colMax is not exported from the xcms package
xcms
3.5 years ago Habil Zare ▴ 200
0
votes
0
replies
833
views
Mass spec intensity difference
xcms
3.5 years ago Phytochem • 0
0
votes
0
replies
823
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.6 years ago abrsoule ▴ 30
0
votes
0
replies
1.6k
views
BiocParallel errors with xcms
BiocParallel xcms
3.6 years ago Yuki ▴ 10
1
vote
3
replies
1.2k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 4.0 years ago by ★ 2.1k • written 4.0 years ago by ▴ 10
0
votes
1
reply
1.7k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 4.0 years ago by 1.6k • written 4.0 years ago by • 0
0
votes
3
replies
1.3k
views
Use xcms but mzR occurs error
software error xcms
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
0
votes
4
replies
1.7k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.2 years ago by 1.6k • written 4.2 years ago by • 0
3
votes
2
replies
1.0k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 4.4 years ago by ★ 2.1k • written 4.4 years ago by ▴ 30
1
vote
2
replies
1.3k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by ▴ 30
0
votes
3
replies
1.8k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.5 years ago by ★ 2.1k • written 4.5 years ago by • 0
2
votes
13
replies
2.3k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
5.1 years ago abrsoule ▴ 30
0
votes
5
replies
1.5k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 5.2 years ago by 1.6k • written 5.2 years ago by • 0
2
votes
6
replies
1.8k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 5.3 years ago by ★ 2.1k • written 5.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
5.3 years ago garfield320 ▴ 30
2
votes
1
reply
1.3k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.6 years ago abrsoule ▴ 30
0
votes
4
replies
3.1k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.6 years ago lmg • 0
0
votes
0
replies
1.2k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.7 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
1.5k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.8 years ago by • 0 • written 6.0 years ago by ★ 2.1k
0
votes
4
replies
1.6k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
6.2 years ago cpataki • 0
0
votes
9
replies
3.4k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
6.2 years ago goh • 0
3
votes
1
reply
1.1k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 6.2 years ago by 1.6k • written 6.2 years ago by • 0
0
votes
1
reply
1.7k
views
XCMS for GC-MS
xcms GC-MS
6.3 years ago Joe • 0
0
votes
4
replies
2.1k
views
Chromatographic peak detection failed for all files
xcms
6.4 years ago yuchiu • 0
0
votes
1
reply
1.7k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.5 years ago by ★ 2.1k • written 6.5 years ago by • 0
2
votes
4
replies
1.5k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.7 years ago james.dalgleish ▴ 30
1
vote
2
replies
3.3k
views
ReadMSData problem with xcms
xcms readmsdata
updated 7.0 years ago by ★ 2.1k • written 7.0 years ago by ▴ 30
1
vote
5
replies
3.4k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
7.0 years ago bhgyu ▴ 30
5
votes
7
replies
2.6k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.0 years ago by ★ 2.1k • written 7.0 years ago by ▴ 30
2
votes
1
reply
2.3k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 7.3 years ago by • 0 • written 8.7 years ago by ▴ 20
0
votes
2
replies
1.3k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 7.3 years ago by 1.6k • written 7.3 years ago by • 0
0
votes
0
replies
1.2k
views
xcmsFragments extract product fragment
xcms xcms2
7.4 years ago riccardo.romoli • 0
1
vote
4
replies
1.9k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 11 days ago by • 0 • written 7.6 years ago by • 0
1
vote
1
reply
1.4k
views
xcms warning message
R xcms warning message
updated 7.9 years ago by ★ 2.1k • written 7.9 years ago by • 0
0
votes
1
reply
1.4k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
7.9 years ago buescher • 0
1
vote
7
replies
2.5k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.9 years ago by ★ 2.1k • written 7.9 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq Input from Salmon + tximport/tximeta by ATpoint ★ 4.5k
> If I use gene_counts_length_scaled.tsv as a metric that has already normalized for library size and the average transcript length No, o…
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k
`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample. For values much larger than the background, the e…
Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0
Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k
Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k
You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…
Votes
Answer: DESeq Input from Salmon + tximport/tximeta
Answer: featureCounts segmentation fault with large chromosomes
Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Awards • All
Popular Question to Assa Yeroslaviz ★ 1.5k
Popular Question to Gordon Smyth 51k
Popular Question to john • 0
Popular Question to James W. MacDonald 67k
Popular Question to abadgerw • 0
Locations • All
France, 8 minutes ago
Germany, 9 minutes ago
Ireland, 10 minutes ago
France, 16 minutes ago
Germany, 17 minutes ago
Traffic: 884 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6