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XCMS Data Processing
r xcms metabolomi NTA Metabolomics
updated 7 months ago by 68k • written 7 months ago by • 0
1
vote
3
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1.1k
views
Tutorial regarding metabolomics with R
Bioconductor Metabolomics xcms
updated 10 months ago by 68k • written 10 months ago by • 0
0
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1
reply
755
views
News: Subject: Last 2 Seats Available for Metabolomics with R/Bioconductor Course (October 7-10)
Metabolomics xcms
updated 11 months ago by • 0 • written 11 months ago by ▴ 10
0
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2
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3.8k
views
Error: BiocParallel errors
xcms msdata BiocParallel
2.0 years ago • updated 24 months ago mavamay • 0
0
votes
0
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835
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
2.2 years ago Abrianna • 0
0
votes
1
reply
866
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 2.4 years ago by ★ 4.9k • written 2.4 years ago by • 0
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0
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686
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XCMS normalization
xcms
2.6 years ago T.RU • 0
0
votes
1
reply
937
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 2.6 years ago by • 0 • written 2.9 years ago by ▴ 10
0
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0
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690
views
dont find xcmsSet for peak analysis
xcms
2.9 years ago aline.lafise • 0
1
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4
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2.0k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 3.1 years ago by • 0 • written 4.8 years ago by ▴ 30
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0
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990
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
3.3 years ago mba • 0
5
votes
5
replies
1.6k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 3.4 years ago by ★ 2.1k • written 3.4 years ago by ▴ 20
0
votes
3
replies
2.0k
views
Warning messages during intallation of XCMS
xcms Install
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
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0
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958
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
3.8 years ago noerman • 0
0
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4
replies
19k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 3.0 years ago by 68k • written 4.0 years ago by • 0
0
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2
replies
1.8k
views
colMax is not exported from the xcms package
xcms
4.3 years ago Habil Zare ▴ 200
0
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0
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1.0k
views
Mass spec intensity difference
xcms
4.4 years ago Phytochem • 0
0
votes
0
replies
1.0k
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
4.4 years ago abrsoule ▴ 30
0
votes
0
replies
1.8k
views
BiocParallel errors with xcms
BiocParallel xcms
4.5 years ago Yuki ▴ 10
1
vote
3
replies
1.5k
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 4.8 years ago by ★ 2.1k • written 4.8 years ago by ▴ 10
0
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1
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2.2k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 4.9 years ago by 1.6k • written 4.9 years ago by • 0
0
votes
3
replies
1.6k
views
Use xcms but mzR occurs error
software error xcms
updated 5.0 years ago by ★ 4.0k • written 5.0 years ago by • 0
0
votes
4
replies
2.1k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 5.0 years ago by 1.6k • written 5.0 years ago by • 0
3
votes
2
replies
1.3k
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 5.2 years ago by ★ 2.1k • written 5.2 years ago by ▴ 30
1
vote
2
replies
1.6k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 5.2 years ago by ▴ 20 • written 5.2 years ago by ▴ 30
0
votes
3
replies
2.5k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 5.3 years ago by ★ 2.1k • written 5.4 years ago by • 0
2
votes
13
replies
3.0k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
6.0 years ago abrsoule ▴ 30
0
votes
5
replies
1.8k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 6.0 years ago by 1.6k • written 6.0 years ago by • 0
2
votes
6
replies
2.2k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 6.1 years ago by ★ 2.1k • written 6.1 years ago by ▴ 10
0
votes
1
reply
1.6k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
6.1 years ago garfield320 ▴ 30
2
votes
1
reply
1.7k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
6.4 years ago abrsoule ▴ 30
0
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4
replies
3.5k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
6.4 years ago lmg • 0
0
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0
replies
1.4k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
6.5 years ago Johannes Rainer ★ 2.1k
0
votes
0
replies
1.7k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 6.6 years ago by • 0 • written 6.8 years ago by ★ 2.1k
0
votes
4
replies
2.0k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
7.0 years ago cpataki • 0
0
votes
9
replies
4.8k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
7.0 years ago goh • 0
3
votes
1
reply
1.3k
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 7.0 years ago by 1.6k • written 7.0 years ago by • 0
0
votes
1
reply
2.0k
views
XCMS for GC-MS
xcms GC-MS
7.1 years ago Joe • 0
0
votes
4
replies
2.6k
views
Chromatographic peak detection failed for all files
xcms
7.2 years ago yuchiu • 0
0
votes
1
reply
2.0k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 7.4 years ago by ★ 2.1k • written 7.4 years ago by • 0
2
votes
4
replies
1.8k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
7.5 years ago james.dalgleish ▴ 30
1
vote
2
replies
3.7k
views
ReadMSData problem with xcms
xcms readmsdata
updated 7.8 years ago by ★ 2.1k • written 7.8 years ago by ▴ 30
1
vote
5
replies
3.8k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
7.9 years ago bhgyu ▴ 30
5
votes
7
replies
3.0k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 7.9 years ago by ★ 2.1k • written 7.9 years ago by ▴ 30
2
votes
1
reply
2.5k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 8.2 years ago by • 0 • written 9.6 years ago by ▴ 20
0
votes
2
replies
1.6k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
0
votes
0
replies
1.3k
views
xcmsFragments extract product fragment
xcms xcms2
8.2 years ago riccardo.romoli • 0
1
vote
4
replies
2.3k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 10 months ago by • 0 • written 8.4 years ago by • 0
1
vote
1
reply
1.6k
views
xcms warning message
R xcms warning message
updated 8.7 years ago by ★ 2.1k • written 8.7 years ago by • 0
0
votes
1
reply
1.6k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
8.7 years ago buescher • 0
78 results • Page 1 of 2
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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k
Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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