Showing : XCMS • reset
0
votes
2
replies
1.2k
views
Error: BiocParallel errors
xcms msdata BiocParallel
8 months ago mavamay • 0
0
votes
0
replies
408
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
11 months ago Abrianna • 0
0
votes
1
reply
468
views
How to get around the warning message: mzR has been built against a different Rcpp version
xcms mzR
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
0
votes
0
replies
374
views
XCMS normalization
xcms
14 months ago T.RU • 0
0
votes
1
reply
607
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 15 months ago by • 0 • written 18 months ago by ▴ 10
0
votes
0
replies
437
views
dont find xcmsSet for peak analysis
xcms
19 months ago aline.lafise • 0
1
vote
4
replies
1.4k
views
xcmsRaw not reading data files in: invalid class “xcmsFileSource” object
xcms
updated 21 months ago by • 0 • written 3.5 years ago by ▴ 30
0
votes
0
replies
665
views
xcms crashes R 4.2.0, also unable to install IPO or msdata
IPO msdata xcms
2.0 years ago mba • 0
5
votes
5
replies
1.0k
views
Warning in In chromPeakSpectra: Lazy evaluation queue is not empty, results in NULL object
xcms Spectra
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Warning messages during intallation of XCMS
xcms Install
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
0
votes
0
replies
643
views
BiocParallel errors in XCMS peak-picking
BiocParallel xcms biocparallel
2.5 years ago noerman • 0
0
votes
4
replies
15k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 20 months ago by 65k • written 2.7 years ago by • 0
0
votes
2
replies
1.4k
views
colMax is not exported from the xcms package
xcms
3.0 years ago Habil Zare ▴ 200
0
votes
0
replies
670
views
Mass spec intensity difference
xcms
3.0 years ago Phytochem • 0
0
votes
0
replies
676
views
Running > 100 samples per group - memory issues
xcms memory findchrompeaks
3.1 years ago abrsoule ▴ 30
0
votes
0
replies
1.4k
views
BiocParallel errors with xcms
BiocParallel xcms
3.1 years ago Yuki ▴ 10
1
vote
3
replies
979
views
Inconsistent peak areas ('into') with Matched Filter Param
xcms
updated 3.5 years ago by ★ 2.0k • written 3.5 years ago by ▴ 10
0
votes
1
reply
1.3k
views
convert from profile to centroid.
MassSpectrometry xcms
updated 3.5 years ago by 1.6k • written 3.5 years ago by • 0
0
votes
3
replies
1.1k
views
Use xcms but mzR occurs error
software error xcms
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by • 0
0
votes
4
replies
1.4k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 3.7 years ago by 1.6k • written 3.7 years ago by • 0
3
votes
2
replies
832
views
How to get MS spectrum from features extracted with findChromPeaks ?
xcms
updated 3.9 years ago by ★ 2.0k • written 3.9 years ago by ▴ 30
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS metaMS
updated 3.9 years ago by ▴ 20 • written 3.9 years ago by ▴ 30
0
votes
3
replies
1.5k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 4.0 years ago by ★ 2.0k • written 4.0 years ago by • 0
2
votes
13
replies
2.0k
views
Found gaps in scan time of file : cut scantime-vector at NA seconds. Error: BiocParallel errors element index: 1, 2, 3, 4, 5, 6 first error: argu…
xcms adjustRtime parameters scantime error biocparallel error
4.6 years ago abrsoule ▴ 30
0
votes
5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
2
votes
6
replies
1.6k
views
xcms centwave roiList error
roiList xcms centwave XIC
updated 4.8 years ago by ★ 2.0k • written 4.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
XCMS - cannot allocate vector of size **Gb when global environment is empty
r xcms
4.8 years ago garfield320 ▴ 30
2
votes
1
reply
1.2k
views
mzR unable to open uncorrupted mzXML file
software error mzR xcms
5.1 years ago abrsoule ▴ 30
0
votes
4
replies
2.8k
views
Error when loading MSnbase package "object 'vI' not found"
msnbase xcms pheatmap
5.1 years ago lmg • 0
0
votes
0
replies
1.0k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.2 years ago Johannes Rainer ★ 2.0k
0
votes
0
replies
1.3k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.3 years ago by • 0 • written 5.5 years ago by ★ 2.0k
0
votes
4
replies
1.4k
views
Intensity discrepancy between raw data and XCMS output
xcms xcmsset intensity
5.7 years ago cpataki • 0
0
votes
9
replies
2.9k
views
Error 'names' attribute must be the same length as the vector xcms
xcms xcms3 mzxml
5.7 years ago goh • 0
3
votes
1
reply
951
views
Does OnDiskMSnExp rewrite original data
xcms msnbase ondiskmsnexp
updated 5.7 years ago by 1.6k • written 5.7 years ago by • 0
0
votes
1
reply
1.5k
views
XCMS for GC-MS
xcms GC-MS
5.8 years ago Joe • 0
0
votes
4
replies
1.8k
views
Chromatographic peak detection failed for all files
xcms
5.9 years ago yuchiu • 0
0
votes
1
reply
1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.0 years ago by ★ 2.0k • written 6.0 years ago by • 0
2
votes
4
replies
1.3k
views
Using massifquant for peak detection of generic matrix data?
xcms kalman centwave yamss
6.2 years ago • updated 6.1 years ago james.dalgleish ▴ 30
1
vote
2
replies
2.9k
views
ReadMSData problem with xcms
xcms readmsdata
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
1
vote
5
replies
3.1k
views
'names' attribute [12] must be the same length as the vector [6]
R xcms vector
6.5 years ago bhgyu ▴ 30
5
votes
7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.5 years ago by ★ 2.0k • written 6.5 years ago by ▴ 30
2
votes
1
reply
2.1k
views
Can XCMS search Metlin using MS/MS spectra and provide a similarity score?
xcms
updated 6.8 years ago by • 0 • written 8.2 years ago by ▴ 20
0
votes
2
replies
1.2k
views
Problem with mzR and/or Rcpp?
mzr rcpp mzr rcpp XCMS
updated 6.8 years ago by 1.6k • written 6.8 years ago by • 0
0
votes
0
replies
991
views
xcmsFragments extract product fragment
xcms xcms2
6.8 years ago riccardo.romoli • 0
0
votes
1
reply
1.5k
views
New to mass spec data analysis
data analysis xcms Tutorial
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
1
vote
1
reply
1.2k
views
xcms warning message
R xcms warning message
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
error when reading .mzML with xcms::xcmsSet
software error R mzR xcms
7.4 years ago buescher • 0
1
vote
7
replies
2.2k
views
Can XCMS output continuum/profile data to netCDF format?
xcms convert protein
updated 7.4 years ago by ★ 2.0k • written 7.4 years ago by • 0
0
votes
1
reply
1.1k
views
get LCMS masses with more significant figures
source code xcms m/z groupval xcmsSet
updated 7.5 years ago by ★ 2.0k • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.6 years ago by 65k • written 7.6 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, 1 minute ago
Miami, FL, 17 minutes ago
WEHI, Melbourne, Australia, 35 minutes ago
Sweden, 52 minutes ago
Japan, 1 hour ago
Traffic: 415 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6