Showing : affy • reset
6
votes
8
replies
2.6k
views
How to find out the genes that changes in expression by using gene level expression data matrix?
limma microarray affy edger
6.5 years ago Jurat Shahidin ▴ 80
1
vote
2
replies
1.3k
views
"hgu133plus2db" package not working in R
microarray affy annotation
updated 6.5 years ago by 68k • written 6.5 years ago by • 0
2
votes
8
replies
1.9k
views
affycoretools package, HTA 2.0 annotation query
annotation affy
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 10
0
votes
0
replies
895
views
table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy insilicomerging
6.7 years ago pratikshasharma47 • 0
0
votes
0
replies
1.1k
views
How to color samples in boxplot based on treatment or control using covdesc file
affy boxplot
6.7 years ago pratikshasharma47 • 0
3
votes
5
replies
1.7k
views
HTA 2.0 Differential expression analysis - design question
limma hta affy annotation
updated 6.7 years ago by 68k • written 6.7 years ago by ▴ 10
0
votes
1
reply
994
views
Differentially expressed genes in rice affymetrix data and annotation
affy microarray differentially expresed genes limma annotation
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
1
vote
1
reply
973
views
Microaaray data analysis
affy
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
0
votes
0
replies
866
views
fData slot in gene expression analysis
affy microarray gene expression analysis
6.7 years ago pratikshasharma47 • 0
1
vote
1
reply
1.5k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by • 0
3
votes
2
replies
7.1k
views
run affy package encounts clariomdhumancdf error
affy getCdfInfo(object) CDF environment Clariom_D_Human
updated 6.8 years ago by ★ 4.1k • written 6.8 years ago by • 0
1
vote
6
replies
1.9k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 6.8 years ago by 53k • written 6.8 years ago by • 0
1
vote
1
reply
842
views
"0" p value from Rosetta resolver?
microarray affy
updated 6.9 years ago by 68k • written 6.9 years ago by • 0
0
votes
2
replies
1.3k
views
Need expert suggestion about Bioconductor package for microarray data anlaysis
affy limma
updated 6.9 years ago by 53k • written 6.9 years ago by • 0
0
votes
0
replies
1.4k
views
ath1121501probe_1.0 error (was GCRMA missing value error on ATH1 chip)
probe affy probe affy
updated 6.9 years ago by 0 • written 21.9 years ago by ▴ 940
0
votes
1
reply
2.1k
views
gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 6.9 years ago by 0 • written 19.0 years ago by ★ 2.2k
0
votes
3
replies
4.0k
views
Issue with DESeqDataSetFromMatrix
deseq2 deseqdatasetfrommatrix rnaseq affy
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
2
votes
5
replies
1.7k
views
Error in get(cdfname, object 'mm430mmentrezgcdf' not found
affy cdf rma
updated 7.1 years ago by ★ 4.1k • written 7.1 years ago by • 0
1
vote
2
replies
912
views
Normalize the raw data from multiple studies
normalization affy
7.3 years ago mahm ▴ 20
1
vote
13
replies
4.4k
views
Using Limma to normalize data sets
limma affy
updated 7.3 years ago by ▴ 160 • written 7.3 years ago by ▴ 20
0
votes
1
reply
2.0k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
7.4 years ago CantExitVIM ▴ 10
0
votes
1
reply
878
views
Why some packages don't work?
software error bioconductor affy
updated 7.4 years ago by ★ 1.1k • written 7.4 years ago by • 0
1
vote
2
replies
1.1k
views
Affe package mas5 error
affy affy mas5
7.6 years ago yuyingxie • 0
2
votes
2
replies
1.5k
views
Affy's exprs not working.. intensity works..
affy exprs intensity
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
votes
1
reply
1.5k
views
Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc
error oligo affy
7.6 years ago kritikamish99 ▴ 10
4
votes
5
replies
1.9k
views
fRMA results different for Windows and Linux
frma expr gene expression data affy
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
1
vote
2
replies
1.4k
views
affymetrix miRNA microarray analysis, (package mirna30cdf)
microarray affy
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 20
0
votes
2
replies
3.8k
views
Can't Use "getGEO" Command Function in R Program
microarray software error bioconductor affy R
updated 7.7 years ago by 68k • written 7.7 years ago by • 0
0
votes
3
replies
1.5k
views
How to bypass ReadAffy warning
affy
7.7 years ago joseph.a.white1 • 0
0
votes
8
replies
4.9k
views
error ReadAffy
Arabidopsis thaliana cdf affy gcrma PROcess oligo xps Arabidopsis thaliana cdf affy xps
updated 7.7 years ago by • 0 • written 11.9 years ago by ▴ 300
2
votes
2
replies
3.4k
views
Issue with 'Could not obtain CDF environment' after attempting to extract information out of an AffyBatch object
Affy cdf .cel
updated 7.7 years ago by 68k • written 7.7 years ago by • 0
1
vote
6
replies
3.0k
views
How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 7.7 years ago by ★ 4.1k • written 7.7 years ago by ▴ 260
2
votes
3
replies
3.3k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
7.7 years ago Chris Mancuso • 0
0
votes
2
replies
2.1k
views
AffyBatch and ArrayExpress
arrayexpress affy bugs
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 230
0
votes
2
replies
2.7k
views
Affymetrix Mogene 1 0 ST
Annotation Normalization affy Annotation Normalization affy
updated 7.8 years ago by • 0 • written 17.0 years ago by ▴ 30
1
vote
3
replies
2.8k
views
AffyLib query in topGO
topGO affy
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
7
votes
8
replies
3.0k
views
Microarray analysis using RMA method using affy, limma
microarray annotation aureus affy
7.9 years ago neranjan007 • 0
0
votes
0
replies
1.6k
views
Interpreting Affymetrix Human Genome U133 Plus 2.0 samples
gene expression gene expression data cel affy affymatrix
7.9 years ago torgeirous • 0
0
votes
1
reply
1.1k
views
Affy ClariomD human transcriptome annotation
affy annotation pd.clariom.d.human
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
2
replies
3.3k
views
Processing array with R
cdf software error affy R
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
5
votes
4
replies
4.2k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
8.0 years ago rahil ▴ 30
0
votes
1
reply
1.1k
views
R version and packages problems
affy bioconductor microarray
8.1 years ago amaalkalds • 0
0
votes
2
replies
1.3k
views
Some questions about chip quality control
affy
updated 8.3 years ago by ★ 4.1k • written 8.3 years ago by ▴ 10
3
votes
5
replies
1.8k
views
Some doubts about the limma package
limma affy
updated 8.3 years ago by ★ 29k • written 8.3 years ago by ▴ 10
1
vote
6
replies
1.8k
views
Why can't I use the same R package to get the same conclusions as the author?
limma affy
updated 8.3 years ago by 68k • written 8.3 years ago by ▴ 10
7
votes
7
replies
2.6k
views
Identify up and down regulated genes in affymetrix data
limma microarray affy
updated 8.4 years ago by ▴ 40 • written 8.4 years ago by • 0
0
votes
7
replies
2.4k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 8.4 years ago by 68k • written 8.4 years ago by ▴ 510
6
votes
8
replies
3.0k
views
Gene level analysis of Affymetrix GeneChip Mouse Exon Arrays
affy aroma.affymetrix exon array xps oligo
8.4 years ago Gordon Smyth 53k
3
votes
2
replies
1.5k
views
RankProd throws "is.infinite(data)" error for type "S4" for differential expression analysis
rankprod limma affy bioconductor microarray
updated 8.4 years ago by 68k • written 8.4 years ago by ▴ 20
0
votes
4
replies
2.1k
views
how to normalize mogene 2.1 st array?
affy
11.1 years ago • updated 8.6 years ago aritra • 0
1,805 results • Page 2 of 37
Recent ...
Replies
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to lamia11me • 0
Popular Question to Gordon Smyth 53k
Popular Question to Michael Love 43k
Popular Question to Luca • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
Switzerland, 28 minutes ago
United States, 1 hour ago
United States, 2 hours ago
Melbourne, Australia, 2 hours ago
United States, 3 hours ago
Traffic: 2495 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6